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Protein Overview: gi|51968468, gi|...

General Information:
Name(s) found: gi|79366424 [NCBI NR]
gi|51968468 [NCBI NR]
gi|34146874 [NCBI NR]
Description(s) found:
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  • gi|79366424|ref|NP_175910.2| RNA binding / ribonuclease III [Arabidopsis thaliana] [NCBI NR]
  • gi|51968468|dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|34146874|gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana] [NCBI NR]
  • At1g55140 [Arabidopsis thaliana]gi|51968468|dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Similar to COG1939: Uncharacterized protein conserved in bacteria [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA binding / ribonuclease III | chr1:20576170-20577999 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g55140 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribonuclease III family protein | chr1:20572503-20574332 REVERSE LENGTH=237 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g55140 OS=Arabidopsis thaliana GN=At1g55140 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 237 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: RNA processing [IEA]
    Molecular Function: RNA binding [IEA]
    ribonuclease III activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSASSTI VRAALDTQPK LRYNPNAPRN VKKNSNLSSF VPPSSPSSSS PATNLSVSVS  60
   61 DLLKRPASKD IGDGFDDTCV GYEKWFPSPP KVEKPRSVFN AASLAYIGDS IYEIYARRHF 120
  121 LFPPLSIEEY NDRVRAVVRC EAQYALLQKL VDDDFLTKDE RDILRWGKNV GSVKTRSTRR 180
  181 AGVAVYNKAS SLETLIGYLY LSNGKRLEEM MQKLGFSSGS STERMVKEAG SNKPSFK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] deduced N/A No confident structure predictions are available.
    2 View Details [79..237] PSI-BLAST 41.69897 X-ray crystal structure of conserved hypothetical protein from Bacillus cereus


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle