YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51968468, gi\|...
Organism:	Arabidopsis thaliana
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51968468, gi|....

Description	E-value	Query Range	Subject Range
gi\|14423484, gi\|... - gi\|18400144\|ref\|NP_566463.1\| URF 4-related [Arabidopsis thaliana], gi\|18377564\|gb\|AAL66948.1\| unknow...	262.0	[0..1]	[236..1]
gi\|215740709, gi... - gi\|55168250\|gb\|AAV44116.1\| unknown protein [Oryza sativa Japonica Group], gi\|215740709\|dbj\|BAG97365....	213.0	[0..60]	[231..57]
gi\|90962220, gi\|... - gi\|90962220\|ref\|YP_536136.1\| hypothetical protein LSL_1246 [Lactobacillus salivarius UCC118], gi\|908... gi\|227891226, gi... - gi\|227891226\|ref\|ZP_04009031.1\| ribonuclease III [Lactobacillus salivarius ATCC 11741], gi\|227867100...	189.0	[0..95]	[222..7]
gi\|224455484, gi... - gi\|239630170\|ref\|ZP_04673201.1\| ribonuclease III family protein [Lactobacillus paracasei subsp. para... gi\|116495759, gi... - gi\|62514025\|ref\|ZP_00385542.1\| COG1939: Uncharacterized protein conserved in bacteria [Lactobacillus... gi\|227533679, gi... - gi\|227533679\|ref\|ZP_03963728.1\| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 2530...	186.0	[0..95]	[233..4]
gi\|55736172, gi\|... - gb\|AAV61701.1\| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066], gb\|AAV59814.1\|... gi\|55822075, gi\|... - gi\|55822075\|ref\|YP_140516.1\| hypothetical protein str0085 [Streptococcus thermophilus CNRZ1066], gi\|... gi\|55736172, gi\|... - gi\|55820187\|ref\|YP_138629.1\| hypothetical protein stu0085 [Streptococcus thermophilus LMG 18311], gi...	182.0	[0..95]	[221..6]
gi\|116100321, gi... - gi\|62527679\|ref\|ZP_00388949.1\| COG1939: Uncharacterized protein conserved in bacteria [Streptococcus...	182.0	[0..95]	[221..6]
gi\|76799580, gi\|... - gi\|76799580\|ref\|ZP_00781705.1\| conserved hypothetical protein [Streptococcus agalactiae 18RS21], gi\|... gi\|23094630, gi\|... - gi\|25010278\|ref\|NP_734673.1\| hypothetical protein gbs0203 [Streptococcus agalactiae NEM316], gi\|2309... gi\|22536392, gi\|... - gi\|22536392\|ref\|NP_687243.1\| hypothetical protein SAG0208 [Streptococcus agalactiae 2603V/R], gi\|225... gi\|76563524, gi\|... - gi\|76788467\|ref\|YP_328939.1\| hypothetical protein SAK_0271 [Streptococcus agalactiae A909], gi\|76563... gi\|77176047, gi\|... - gi\|77405369\|ref\|ZP_00782464.1\| conserved hypothetical protein [Streptococcus agalactiae H36B], gi\|77... gi\|77160162, gi\|... - gi\|77413800\|ref\|ZP_00789980.1\| conserved hypothetical protein [Streptococcus agalactiae 515], gi\|771... gi\|77410950, gi\|... - gi\|77410950\|ref\|ZP_00787306.1\| conserved hypothetical protein [Streptococcus agalactiae CJB111], gi\|... gi\|77409662, gi\|... - gi\|77409662\|ref\|ZP_00786332.1\| conserved hypothetical protein [Streptococcus agalactiae COH1], gi\|77...	180.0	[0..95]	[220..3]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSASSTI VRAALDTQPK LRYNPNAPRN VKKNSNLSSF VPPSSPSSSS PATNLSVSVS  60
   61 DLLKRPASKD IGDGFDDT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVGYEKWFPS PPKVEKPRSV FNAASLAYIG DSIYEIYARR HFLFPPLSIE EYNDRVRAVV  60
   61 RCEAQYALLQ KLVDDDFLTK DERDILRWGK NVGSVKTRST RRAGVAVYNK ASSLETLIGY 120
  121 LYLSNGKRLE EMMQKLGFSS GSSTERMVKE AGSNKPSFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1u61A
Description:	X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits