YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51968468, gi\|...
Organism:	Arabidopsis thaliana
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51968468, gi|....

Description	E-value	Query Range	Subject Range
gi\|14423484, gi\|... - gi\|18400144\|ref\|NP_566463.1\| URF 4-related [Arabidopsis thaliana], gi\|18377564\|gb\|AAL66948.1\| unknow...	262.0	[0..1]	[236..1]
gi\|215740709, gi... - gi\|55168250\|gb\|AAV44116.1\| unknown protein [Oryza sativa Japonica Group], gi\|215740709\|dbj\|BAG97365....	213.0	[0..60]	[231..57]
gi\|90962220, gi\|... - gi\|90962220\|ref\|YP_536136.1\| hypothetical protein LSL_1246 [Lactobacillus salivarius UCC118], gi\|908... gi\|227891226, gi... - gi\|227891226\|ref\|ZP_04009031.1\| ribonuclease III [Lactobacillus salivarius ATCC 11741], gi\|227867100...	189.0	[0..95]	[222..7]
gi\|224455484, gi... - gi\|239630170\|ref\|ZP_04673201.1\| ribonuclease III family protein [Lactobacillus paracasei subsp. para... gi\|116495759, gi... - gi\|62514025\|ref\|ZP_00385542.1\| COG1939: Uncharacterized protein conserved in bacteria [Lactobacillus... gi\|227533679, gi... - gi\|227533679\|ref\|ZP_03963728.1\| ribonuclease III [Lactobacillus paracasei subsp. paracasei ATCC 2530...	186.0	[0..95]	[233..4]
gi\|55736172, gi\|... - gb\|AAV61701.1\| conserved hypothetical protein [Streptococcus thermophilus CNRZ1066], gb\|AAV59814.1\|... gi\|55822075, gi\|... - gi\|55822075\|ref\|YP_140516.1\| hypothetical protein str0085 [Streptococcus thermophilus CNRZ1066], gi\|... gi\|55736172, gi\|... - gi\|55820187\|ref\|YP_138629.1\| hypothetical protein stu0085 [Streptococcus thermophilus LMG 18311], gi...	182.0	[0..95]	[221..6]
gi\|116100321, gi... - gi\|62527679\|ref\|ZP_00388949.1\| COG1939: Uncharacterized protein conserved in bacteria [Streptococcus...	182.0	[0..95]	[221..6]
gi\|76799580, gi\|... - gi\|76799580\|ref\|ZP_00781705.1\| conserved hypothetical protein [Streptococcus agalactiae 18RS21], gi\|... gi\|23094630, gi\|... - gi\|25010278\|ref\|NP_734673.1\| hypothetical protein gbs0203 [Streptococcus agalactiae NEM316], gi\|2309... gi\|22536392, gi\|... - gi\|22536392\|ref\|NP_687243.1\| hypothetical protein SAG0208 [Streptococcus agalactiae 2603V/R], gi\|225... gi\|76563524, gi\|... - gi\|76788467\|ref\|YP_328939.1\| hypothetical protein SAK_0271 [Streptococcus agalactiae A909], gi\|76563... gi\|77176047, gi\|... - gi\|77405369\|ref\|ZP_00782464.1\| conserved hypothetical protein [Streptococcus agalactiae H36B], gi\|77... gi\|77160162, gi\|... - gi\|77413800\|ref\|ZP_00789980.1\| conserved hypothetical protein [Streptococcus agalactiae 515], gi\|771... gi\|77410950, gi\|... - gi\|77410950\|ref\|ZP_00787306.1\| conserved hypothetical protein [Streptococcus agalactiae CJB111], gi\|... gi\|77409662, gi\|... - gi\|77409662\|ref\|ZP_00786332.1\| conserved hypothetical protein [Streptococcus agalactiae COH1], gi\|77...	180.0	[0..95]	[220..3]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSASSTI VRAALDTQPK LRYNPNAPRN VKKNSNLSSF VPPSSPSSSS PATNLSVSVS  60
   61 DLLKRPASKD IGDGFDDT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVGYEKWFPS PPKVEKPRSV FNAASLAYIG DSIYEIYARR HFLFPPLSIE EYNDRVRAVV  60
   61 RCEAQYALLQ KLVDDDFLTK DERDILRWGK NVGSVKTRST RRAGVAVYNK ASSLETLIGY 120
  121 LYLSNGKRLE EMMQKLGFSS GSSTERMVKE AGSNKPSFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1u61A
Description:	X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits