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Protein Overview: KDSA2_ARATH

General Information:
Name(s) found: KDSA2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79318044|ref|NP_001031055.1| ATKDSA2; 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|51968956|dbj|BAD43170.1| putative 3-deoxy-D-manno-2-octulosonate-8- phosphate synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|34146862|gb|AAQ62439.1| At1g16340 [Arabidopsis thaliana] [NCBI NR]
  • gi|15219214|ref|NP_173084.1| ATKDSA2; 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] [NCBI NR]
  • gi|145323916|ref|NP_001077547.1| ATKDSA2; 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] [NCBI NR]
  • 2-dehydro-3-deoxyphosphooctonate aldolase 2 OS=Arabidopsis thaliana GN=KDSA2 PE=1 SV=1 [Swiss-Prot]
  • At1g16340 [Arabidopsis thaliana]gi|51968956|dbj|BAD43170.1| putative 3-deoxy-D-manno-2-octulosonate-8- phosphate synthase [Arabidopsis thaliana]gi|15219214|ref|NP_173084.1| 2-dehydro-3-deoxyphosphooctonate aldolase, putative / phospho-2-dehydro-3-deoxyo [nrdb_11152004_Chlamydomonas]
  • | Symbols: ATKDSA2, ATKSDA | ATKDSA2/ATKSDA; 3-deoxy-8-phosphooctulonate synthase | chr1:5588117-5590463 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: ATKDSA2, ATKSDA | ATKDSA2/ATKSDA | chr1:5588117-5590463 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g16340 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative 3-deoxy-D-manno-2-octulosonate-8- phosphate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATKDSA2, ATKSDA | Aldolase superfamily protein | chr1:5588123-5590469 REVERSE LENGTH=291 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 2-dehydro-3-deoxyphosphooctonate aldolase 2 OS=Arabidopsis thaliana GN=KDSA2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 291 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA][ISS]
    endomembrane system [IEA]
    Biological Process: rhamnogalacturonan II biosynthetic process [TAS]
    metabolic process [ISS]
    Molecular Function: 3-deoxy-8-phosphooctulonate synthase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSASLLYD QLKVAEPFFL LAGPNVIESE EHVLRMAKSI KDISTKLGLP LVFKSSFDKA  60
   61 NRTSSKSFRG PGMAEGLKIL EKVKVAFDLP IVTDVHESSQ CEAVGKVADI IQIPAFLCRQ 120
  121 TDLLVAAAQS GKIINIKKGQ FCGHSVMRNS AEKVRLAGNP NVMVCERGTM FGYNDLIVDP 180
  181 RNLEWMREAD CPVVADITHS LQQPAGKKLD GGGVASGGLR ELIPCIARTA VAVGVDGIFM 240
  241 EVHDDPLNAP VDGPTQWPLR HLEELLEELI AIASVTKGKQ QFQIDLTPYR D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..291] PSI-BLAST 81.69897 Crystal structure of KDO-8-phosphate synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-deoxy-8-phosphooctulonate synthase activity
    		•  4.43037733440316 bayes_pls_golite062009
  • 3-deoxy-7-phosphoheptulonate synthase activity
    		•  2.72022882819661 bayes_pls_golite062009
  • catalytic activity
    		•  2.67031204377352 bayes_pls_golite062009
  • fructose-bisphosphate aldolase activity
    		•  0.840107349031025 bayes_pls_golite062009
  • lyase activity
    		•  0.740424046054758 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  0.643395146148785 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  0.490222900376021 bayes_pls_golite062009
  • transferase activity
    		•  0.464721888799972 bayes_pls_golite062009
  • aldehyde-lyase activity
    		•  0.351872954170322 bayes_pls_golite062009
  • transaldolase activity
    		•  0.337067552042715 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.0484922693826344 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle