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Protein Overview: SCD1_ARATH

General Information:
Name(s) found: SCD1_ARATH [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1187 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: [NOT]guard cell differentiation [IMP]
    multidimensional cell growth [IMP]
    cytokinesis by cell plate formation [IMP]
    guard mother cell cytokinesis [IMP]
    Molecular Function: protein binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRIFEYFVV CGLGPEMRTV DGDLGFHGMQ TFYLPALLDQ FPPTDQSPYP APPPQLPTCV  60
   61 LPAGVEFHSS GFVSSDPASF PRSYPIVLTE GDGSKIFVSC IAFRDRVCED IIEAYRLPPN 120
  121 TYADKCICLV SHAPNFRVLR NSLEEIFVLC FSSEGSCKPL WDIIAYMVSN VPLPTPGKDR 180
  181 VLFAVENCLL SVEAPPEDSL PQADISLQPL VQCLDVDNLI KLFTSVLVER RILIRSNKYS 240
  241 LLTLVSESIC HLIYPFRWLQ VYIPLLFFSG VDYIDAPTPY MMGLHSDVDT SNLAMDGVVV 300
  301 VDLDINQITT SEEIPQIPEP EFSTLRNDIL KLLHPNVVAI DQLKGFGNSV EQCPKSLSKP 360
  361 WGEDHDLQLR VIFLKCFASI LGGYRNFIEN KVFSTDAFLK RRSRSTNQPP EPMLVQFLGS 420
  421 FAFLDYLERR LSSDEKSTNL LEKLQDAVGR GQDAMSILPK SSMEPEIITI AEPEVEESAT 480
  481 RYTYDRFPAS VRSEEQEEKR KQILAAASGA LESNGRHPPS SPPGKNTKED NFSSMERAAE 540
  541 RERMVLDIQV KLQGLWLRLL KLGSDEDPLS SFEYGTILAL IESDAEGIGG SGFIECIREH 600
  601 LYSGWHGQLS EEQFIAVKEL LKMAVGRAAS RSDLSTVRDA LEVSAEMFKK DANNVSDYVQ 660
  661 RHLISIPIWE ELRFWEGYFE YLMEQPANES VNYATLVTAR LIIVASHMAG LGLPDTEAWN 720
  721 MIETIAEKQK LGYKLLIKLR GFLSHVQQLR VGYWGASSFK QQAISAGLPS PRPKDVSVSD 780
  781 ETQQPSEASG RSWVQSMFSR DTASRANSFS RVRKWVSDNA SSDITAAAQK KIQTNVRVLK 840
  841 GHGGAVTALH SVTRREVCDL VGDREDAGFF ISGSTDCLVK IWDPSLRGSE LRATLKGHTG 900
  901 TVRAISSDRG KIVSGSDDLS VIVWDKQTTQ LLEELKGHDS QVSCVKMLSG ERVLTAAHDG 960
  961 TVKMWDVRTD MCVATVGRCS SAILSLEYDD STGILAAAGR DTVANIWDIR SGKQMHKLKG1020
 1021 HTKWIRSIRM VEDTLITGSD DWTARVWSVS RGSCDAVLAC HAGPVQSVEY SPFDKGIITG1080
 1081 SADGLLRFWE NDEGGIKCVK NITLHSSSIL SINAGENWLG IGAADNSMSL FHRPSNAGTK1140
 1141 VSGWQLYRVP QRTAAVVRCV ASDLERKRIC SGGRNGVLRL WDATINI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] Pfam 3.05061 No description for PF03456.10 was found. No confident structure predictions are available.
    2 View Details [119..316] Pfam 37.481486 No description for PF02141.13 was found. No confident structure predictions are available.
    3 View Details [317..430] Pfam 23.79588 No description for PF03455.11 was found. No confident structure predictions are available.
    4 View Details [431..633] deduced N/A No confident structure predictions are available.
    5 View Details [634..715] deduced N/A No confident structure predictions are available.
    6 View Details [716..841] PSI-BLAST 18.221849 Crystal Structure analysis of the beta-propeller protein Ski8p
    7 View Details [842..1187] PSI-BLAST 89.0 No description for 2ovpB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle