| Protein: | SCD1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1187 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for SCD1_ARATH.
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MGRIFEYFVV CGLGPEMRTV DGDLGFHGMQ TFYLPALLDQ FPPTDQSPYP APPPQLPTCV 60
61 LPAGVEFHSS GFVSSDPASF PRSYPIVLTE GDGSKIFVSC IAFRDRVCED IIEAYRLP
|
| Detection Method: |  |
| Confidence: | 3.05061 |
| Match: | PF03456.10 |
| Description: | No description for PF03456.10 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [119-316] |
1 11 21 31 41 51
| | | | | |
1 PNTYADKCIC LVSHAPNFRV LRNSLEEIFV LCFSSEGSCK PLWDIIAYMV SNVPLPTPGK 60
61 DRVLFAVENC LLSVEAPPED SLPQADISLQ PLVQCLDVDN LIKLFTSVLV ERRILIRSNK 120
121 YSLLTLVSES ICHLIYPFRW LQVYIPLLFF SGVDYIDAPT PYMMGLHSDV DTSNLAMDGV 180
181 VVVDLDINQI TTSEEIPQ
|
| Detection Method: | |
| Confidence: | 37.481486 |
| Match: | PF02141.13 |
| Description: | No description for PF02141.13 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [317-430] |
1 11 21 31 41 51
| | | | | |
1 IPEPEFSTLR NDILKLLHPN VVAIDQLKGF GNSVEQCPKS LSKPWGEDHD LQLRVIFLKC 60
61 FASILGGYRN FIENKVFSTD AFLKRRSRST NQPPEPMLVQ FLGSFAFLDY LERR
|
| Detection Method: | |
| Confidence: | 23.79588 |
| Match: | PF03455.11 |
| Description: | No description for PF03455.11 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [431-633] |
1 11 21 31 41 51
| | | | | |
1 LSSDEKSTNL LEKLQDAVGR GQDAMSILPK SSMEPEIITI AEPEVEESAT RYTYDRFPAS 60
61 VRSEEQEEKR KQILAAASGA LESNGRHPPS SPPGKNTKED NFSSMERAAE RERMVLDIQV 120
121 KLQGLWLRLL KLGSDEDPLS SFEYGTILAL IESDAEGIGG SGFIECIREH LYSGWHGQLS 180
181 EEQFIAVKEL LKMAVGRAAS RSD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [634-715] |
1 11 21 31 41 51
| | | | | |
1 LSTVRDALEV SAEMFKKDAN NVSDYVQRHL ISIPIWEELR FWEGYFEYLM EQPANESVNY 60
61 ATLVTARLII VASHMAGLGL PD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [716-841] |
1 11 21 31 41 51
| | | | | |
1 TEAWNMIETI AEKQKLGYKL LIKLRGFLSH VQQLRVGYWG ASSFKQQAIS AGLPSPRPKD 60
61 VSVSDETQQP SEASGRSWVQ SMFSRDTASR ANSFSRVRKW VSDNASSDIT AAAQKKIQTN 120
121 VRVLKG
|
| Detection Method: | |
| Confidence: | 18.221849 |
| Match: | 1s4uX |
| Description: | Crystal Structure analysis of the beta-propeller protein Ski8p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [842-1187] |
1 11 21 31 41 51
| | | | | |
1 HGGAVTALHS VTRREVCDLV GDREDAGFFI SGSTDCLVKI WDPSLRGSEL RATLKGHTGT 60
61 VRAISSDRGK IVSGSDDLSV IVWDKQTTQL LEELKGHDSQ VSCVKMLSGE RVLTAAHDGT 120
121 VKMWDVRTDM CVATVGRCSS AILSLEYDDS TGILAAAGRD TVANIWDIRS GKQMHKLKGH 180
181 TKWIRSIRMV EDTLITGSDD WTARVWSVSR GSCDAVLACH AGPVQSVEYS PFDKGIITGS 240
241 ADGLLRFWEN DEGGIKCVKN ITLHSSSILS INAGENWLGI GAADNSMSLF HRPSNAGTKV 300
301 SGWQLYRVPQ RTAAVVRCVA SDLERKRICS GGRNGVLRLW DATINI
|
| Detection Method: | |
| Confidence: | 89.0 |
| Match: | 2ovpB |
| Description: | No description for 2ovpB was found. |
