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Protein Overview: gi|6459851, gi|1...

General Information:
Name(s) found: gi|6459851 [NCBI NR]
gi|15807057 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|6459851|gb|AAF11608.1|AE002042_3 polynucleotide phosphorylase [Deinococcus radiodurans R1] [NCBI NR]
  • gi|15807057|ref|NP_295786.1| polynucleotide phosphorylase/polyadenylase [Deinococcus radiodurans R1] [NCBI NR]
    • Organism: Deinococcus radiodurans R1
    Length: 810 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLKGRAGA GASAFRWMFL SPEQPQARLP PMIGKTFTTM LGGRELSIET GKLAKLVSGS  60
   61 VTVRYGDTLL LVTAQASDTQ SKLDFLPLTV EFEERHYAVG KIPGSFQRRE GRPGEKAILS 120
  121 ARITDRQIRP LFPKGYRHET QVIITVLSAD GQNAPDVLGP IGAAAALSIS DIPWAGPTAC 180
  181 VRVGQIDGQY VVNPTTEQLT RSRMDLVVAG TREAVMMVEC GAQTVSEDDL VGAIEFAHAE 240
  241 MQGVIALIEQ MRAEVGHEKF NFLAEEGPAN DYVPELTEKA KAAGLRDALL THGKKDRSAR 300
  301 LKALRNGLIE GYVPDPTAEG SAELTQALKD AFGKVEKREL RRLILEENLR ADGRDSKTVR 360
  361 PIWIEARPLP TAHGSAVFTR GETQVLGVTT LGTERDEILI DDLTAESGDK FLLHYNFPPY 420
  421 STGEVKRMGG QSRREIGHGN LAKRAIRAVL PSFEEFPYVI RVVGDVLESN GSSSMGTVCA 480
  481 GTLSLMDAGV PLKAPVAGVA MGLVMEGDNY RVLTDILGLE DALGDMDFKV CGTAEGVTAL 540
  541 QMDIKVGGIT PQIMREALAQ AKEGRLHILG KMAEVLAAPR AELSPTAPHI LSLKINPELI 600
  601 GKVIGPGGKQ VRELEAMGAQ VTIEEDGTVR IFSASGESAE AVKARIEAVT KEAKVGEEFE 660
  661 GTVVKIAPFG AFVNLFPGQD GMLHISQLSE QRVENVEDVL TVGDKLKVKI ANIDDRGKID 720
  721 LIRPELEGKV PLREPRAPRG GDRGPRRDSD RGGDRGPRRE FSDRGPRPEG ARSERPEGQR 780
  781 TERPATAPAT QESSQSSDAP AAPVFPRRED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..810] PSI-BLAST 138.0 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  3.62650207668685 bayes_pls_golite062009
  • exoribonuclease activity
    		•  2.49584565422948 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  2.48625785660839 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  2.46667410843173 bayes_pls_golite062009
  • RNA binding
    		•  1.54417931838494 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18773479836745 bayes_pls_golite062009
  • transcription termination factor activity
    		•  1.01993495617192 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • ATP-dependent peptidase activity
    		•  0.66778558090199 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.666538467028341 bayes_pls_golite062009
  • mRNA binding
    		•  0.6661659753234 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.609202649585287 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.59064223556107 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  0.51810239718467 bayes_pls_golite062009
  • binding
    		•  0.478154009944658 bayes_pls_golite062009
    		• 0.416217645025381 bayes_pls_golite062009
  • structural molecule activity
    		•  0.36020344477758 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.348601923227652 bayes_pls_golite062009
  • nuclease activity
    		•  0.262228287184671 bayes_pls_golite062009
  • DNA binding
    		•  0.237793607944966 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0287026367466632 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle