YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: TRPB_PSEAE

General Information:
Name(s) found: TRPB_PSEAE [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|9945857|gb|AAG03426.1|AE004443_4 tryptophan synthase beta chain [Pseudomonas aeruginosa PAO1] [NCBI NR]
  • gi|15595234|ref|NP_248726.1| tryptophan synthase subunit beta [Pseudomonas aeruginosa PAO1] [NCBI NR]
  • Tryptophan synthase beta chain OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpB PE=3 SV=2 [Swiss-Prot]
  • tryptophan synthase beta chain [Pseudomonas aeruginosa PAO1]gi|9945857|gb|AAG03426.1| tryptophan synthase beta chain [Pseudomonas aeruginosa PAO1]gi|12230946|sp|P07345|TRPB_PSEAE Tryptophan synthase beta chaingi|11352730|pir||H83640 tryptophan synthase [nrdb_11152004_Chlamydomonas]
  • tryptophan synthase beta chain [Pseudomonas aeruginosa PAO1] [nr-271106-contam.fasta]
  • tryptophan synthase subunit beta [Pseudomonas aeruginosa PAO1] [nr-271106-contam.fasta]
  • synthase beta chain[Pseudomonas aeruginosa PAO1 PAO1-UW] [P_aeruginosa_PAO1_PGD-contam.fasta]
    • Organism: Pseudomonas aeruginosa PAO1
    Length: 402 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYRNGPDA KGLFGRFGGQ YVAETLMPLI LDLAREYEKA KDDPAFQEEL AYFQRDYVGR  60
   61 PSPLYFAERL TEHCGGAKIY LKREELNHTG AHKINNCIGQ ILLARRMGKK RIIAETGAGM 120
  121 HGVATATVAA RFGLQCVIYM GTTDIDRQQA NVFRMKLLGA EVIPVTAGTG TLKDAMNEAL 180
  181 RDWVTNVDST FYLIGTVAGP HPYPAMVRDF QAVIGKETRE QLAEKEGRLP DSLVACIGGG 240
  241 SNAMGLFHPF LDDAGVQIVG VEAAGHGIDT GKHAASLNGG VPGVLHGNRT FLLQDADGQI 300
  301 IDAHSISAGL DYPGIGPEHA WLHDTGRVEY TSITDDEALE AFHTCCRLEG IIPALESSHA 360
  361 LAEVFKRAPS LPKEHIMVVN LSGRGDKDMQ TVMHHMQQES KA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..402] PSI-BLAST 124.0 X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.77857340461162 bayes_pls_golite062009
  • catalytic activity
    		•  2.76038225023173 bayes_pls_golite062009
  • lyase activity
    		•  2.54165185299539 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  1.82148750304597 bayes_pls_golite062009
  • cysteine synthase activity
    		•  1.54736143994982 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.52790731142158 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.943946746392831 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.86525519885835 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.8463142805916 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.57533596285038 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle