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Protein Overview: gi|30259905, gi|...

General Information:
Name(s) found: gi|30265228 [NCBI NR]
gi|30259905 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|30265228|ref|NP_847605.1| BigG family transcription antiterminator [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30259905|gb|AAP29091.1| transcription antiterminator, BglG family [Bacillus anthracis str. Ames] [NCBI NR]
    • Organism: Bacillus anthracis str. Ames
    Length: 891 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription antiterminator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIDLIFNA IQEGKYTEGV TASELATLLQ LDRANVSSDL NKLVKDKRLL KTNTRPVRFY  60
   61 IETNALLETH SKEVTSLDTF AIENTSLKIA IEKAKASILY PPNGMHTLLL GETGVGKSMF 120
  121 ASLMHEYAIE VEQLPKNAPF IVFNCADYAN NPQLLLGQLF GIKKGAYTGA SDQKGLIEKA 180
  181 HEGILFLDEV HRLPPEGQEM LFTFIDRGVY RRLGETENER KAQVLIITAT TEEPNSFLLK 240
  241 TFTRRIPMTV TLPPLRERTH KERFALLQLF FTNEAIRLRK EIHVSPNAMR AFVFYNCPNN 300
  301 IGQLKTDVQI ACAKAYSDFV TKKRDSVYVS STDLPWYMKE GLFIERKSRH LYQIPNETFI 360
  361 FTSDEGWSNH KIENEKQSSI YDYIDYKYEE LQARGIEEEE LELLIENDIQ SFFVQYFNQM 420
  421 SKKTSHENVF KIVDRNIVSV CERIAELAEK HLSKTFDEKV FLALSLHVQT TLQRLQAGKQ 480
  481 IHHPQLNQIR TKYKEAFSVA MQCIQLLEDE LQITMPIDEA GFLTMFFVVD PIPASQTEVK 540
  541 VLILAHGNGI ATEMANVANE LLGIDEVTGI DMPLHESPKD FLERVKVYMK TLQNVNGLLL 600
  601 LVDMGSLAYI GDILETEFKI PVRVLSMTST PHALEAARKA QLGYSLDALY ETVKNLTPFY 660
  661 LNVQEEKKKP LSPMKSVILT ACLTGEGSAL AIQKMLENYL RFDKDLIEII PISIVHEKDL 720
  721 TKMIENIKKE RNIICIVTNF DVQVPCLTYH FQDIVNYTAI QPIQELITYE ETYAKMADIL 780
  781 EQQMQRNDGA LLIKTIRYAL NTIQELISLQ LTPDSLMGVI LHMSCMVDRL QKGESLLPHP 840
  841 DKEKRRQDEY WMYMKVKKAL QPIENTFEIQ IPDDEVFYVM DFFIKNQPIK N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..72] PSI-BLAST 49.30103 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
    2 View Details [73..329] PSI-BLAST 46.0 Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding
    3 View Details [330..408] PSI-BLAST 9.0 No description for 2di4A was found.
    4 View Details [409..672] PSI-BLAST 28.0 Structure of the native and inactive LicT PRD from B. subtilis
    5 View Details [673..891] FFAS03 3.56 Transcriptional antiterminator LicT

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  2.56369131794526 bayes_pls_golite062009
  • transcription antiterminator activity
    		•  1.04498481068613 bayes_pls_golite062009
    5
    Term Confidence Notes
  • transcription regulator activity
    		•  2.39160269038489 bayes_pls_golite062009
  • transcription antiterminator activity
    		•  0.366538563397034 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle