| Protein: | gi|30259905, gi|... |
| Organism: | Bacillus anthracis str. Ames |
| Length: | 891 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259905, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..891] | [1..891] |
|
|
0.0 | [1..891] | [1..891] |
|
|
0.0 | [1..891] | [1..891] |
|
|
0.0 | [1..891] | [1..892] |
|
|
0.0 | [1..891] | [1..891] |
|
|
0.0 | [78..891] | [12..825] |
|
|
0.0 | [46..891] | [1..845] |
|
|
0.0 | [1..886] | [1..893] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MKRIDLIFNA IQEGKYTEGV TASELATLLQ LDRANVSSDL NKLVKDKRLL KTNTRPVRFY 60
61 IETNALLETH SK
|
| Detection Method: |  |
| Confidence: | 49.30103 |
| Match: | 1ny5A |
| Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [73-329] |
1 11 21 31 41 51
| | | | | |
1 EVTSLDTFAI ENTSLKIAIE KAKASILYPP NGMHTLLLGE TGVGKSMFAS LMHEYAIEVE 60
61 QLPKNAPFIV FNCADYANNP QLLLGQLFGI KKGAYTGASD QKGLIEKAHE GILFLDEVHR 120
121 LPPEGQEMLF TFIDRGVYRR LGETENERKA QVLIITATTE EPNSFLLKTF TRRIPMTVTL 180
181 PPLRERTHKE RFALLQLFFT NEAIRLRKEI HVSPNAMRAF VFYNCPNNIG QLKTDVQIAC 240
241 AKAYSDFVTK KRDSVYV
|
| Detection Method: | |
| Confidence: | 46.0 |
| Match: | 1ojlA |
| Description: | Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [330-408] |
1 11 21 31 41 51
| | | | | |
1 SSTDLPWYMK EGLFIERKSR HLYQIPNETF IFTSDEGWSN HKIENEKQSS IYDYIDYKYE 60
61 ELQARGIEEE ELELLIEND
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 2di4A |
| Description: | No description for 2di4A was found. |
|
Region A: Residues: [409-672] |
1 11 21 31 41 51
| | | | | |
1 IQSFFVQYFN QMSKKTSHEN VFKIVDRNIV SVCERIAELA EKHLSKTFDE KVFLALSLHV 60
61 QTTLQRLQAG KQIHHPQLNQ IRTKYKEAFS VAMQCIQLLE DELQITMPID EAGFLTMFFV 120
121 VDPIPASQTE VKVLILAHGN GIATEMANVA NELLGIDEVT GIDMPLHESP KDFLERVKVY 180
181 MKTLQNVNGL LLLVDMGSLA YIGDILETEF KIPVRVLSMT STPHALEAAR KAQLGYSLDA 240
241 LYETVKNLTP FYLNVQEEKK KPLS
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1tlvA |
| Description: | Structure of the native and inactive LicT PRD from B. subtilis |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.56369131794526 | bayes_pls_golite062009 |
| transcription antiterminator activity | 1.04498481068613 | bayes_pls_golite062009 |
|
Region A: Residues: [673-891] |
1 11 21 31 41 51
| | | | | |
1 PMKSVILTAC LTGEGSALAI QKMLENYLRF DKDLIEIIPI SIVHEKDLTK MIENIKKERN 60
61 IICIVTNFDV QVPCLTYHFQ DIVNYTAIQP IQELITYEET YAKMADILEQ QMQRNDGALL 120
121 IKTIRYALNT IQELISLQLT PDSLMGVILH MSCMVDRLQK GESLLPHPDK EKRRQDEYWM 180
181 YMKVKKALQP IENTFEIQIP DDEVFYVMDF FIKNQPIKN
|
| Detection Method: | |
| Confidence: | 3.56 |
| Match: | 1h99A |
| Description: | Transcriptional antiterminator LicT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.39160269038489 | bayes_pls_golite062009 |
| transcription antiterminator activity | 0.366538563397034 | bayes_pls_golite062009 |
