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Protein Overview: gi|30257084, gi|...

General Information:
Name(s) found: gi|30262453 [NCBI NR]
gi|30257084 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|30262453|ref|NP_844830.1| RNA polymerase sigma factor SigJ [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30257084|gb|AAP26316.1| RNA polymerase sigma-70 factor, ECF subfamily [Bacillus anthracis str. Ames] [NCBI NR]
    • Organism: Bacillus anthracis str. Ames
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription initiation [ISSLink to PubMed article]
    Molecular Function: sigma factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEQLYEAY QPLLFSLAYR ILGSVMDAED IVQDVFISLN NIENLQSIEN MKAFLCKMAT  60
   61 NRSIDKLRSA AHKRNVYVGM WLPEPLVEES NEPSESFVMK ESLSTAYLLL LQQLSEVERI 120
  121 VFILREVFSY EYEEIASIVD KSSVNCRKIF QRARKSILDK PKQSTLSTKK MAAYVEKFVS 180
  181 SLQCGDAQGM LEVLKTDAIL KADGGGKVTT AIHPIYSADR IIRLFFGIAQ RLTEAYTVDF 240
  241 KMVNGMPGVI VTINNKITYV LSFAFEDEKI SNIYMVGNPE KLMHLNVKI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] PSI-BLAST 27.0 SigmaE factor (RpoE)
    2 View Details [166..289] FFAS03 3.48 Structure of an M.tuberculosis LEH-like epoxide hydrolase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  1.02634976114785 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.65597262896834 bayes_pls_golite062009
  • protein binding
    		•  0.745218557375967 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.492648936240102 bayes_pls_golite062009
  • catalytic activity
    		•  0.153463201473105 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle