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Protein Overview: gi|30254018, gi|...

General Information:
Name(s) found: gi|30260650 [NCBI NR]
gi|30254018 [NCBI NR]
Description(s) found:
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  • gi|30260650|ref|NP_843027.1| arginine utilization regulatory protein RocR [Bacillus anthracis str. Ames] [NCBI NR]
  • gi|30254018|gb|AAP24513.1| arginine utilization regulatory protein RocR [Bacillus anthracis str. Ames] [NCBI NR]
  • arginine utilization regulatory protein RocR [Bacillus anthracis str. Sterne]gi|47525758|ref|YP_017107.1| arginine utilization regulatory protein RocR [Bacillus anthracis str. 'Ames Ancestor']gi|30260650|ref|NP_843027.1| arginine utilization regulatory [nrdb_11152004_Chlamydomonas]
  • arginine utilization regulatory protein RocR [Bacillus anthracis str. Ames] [nr-271106-contam.fasta]
    • Organism: Bacillus anthracis str. Ames
    Length: 467 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: arginine catabolic process [ISSLink to PubMed article]
    Molecular Function: transcription activator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTEEINLKQ IIEMNMLYET LLNELDIGIH IINEESKTII YNRKMMEIES MERSDVLYKS  60
   61 PLEVFAFEEN KNSTLIEALK LGKTNKNIKQ TYFNNKGQEI TTINDTFPII ENGKIKGAIE 120
  121 ISKEMNHLKQ TIKMDSFRKQ NTKFTFDHII GDSEAIQSTI AEGKRVIRTS SSILLVGETG 180
  181 TGKELFAQSI HNESQRSTKP FISQNCAAIP DTLMESLLFG TNRGAFTGAI DKAGLFEEAN 240
  241 GGTLLLDEIN SLSPALQAKL LRAIQEKTIR RIGGTQEKEI DVRIIATINE DPLEAITHNR 300
  301 LREDLYYRLS VVTLCLPPLR ERKEDIPALV QHFIEKYNIQ FGLSVTDVDI HVREFLYAYD 360
  361 WPGNVRELEH IIEGSMNLVE DENIITAFHL PTRFREQIKK EFNTQPFLTN NATDAPKTLK 420
  421 HTIAEMEKNY ITQILKEYHG NISQAAKFLG LSRQNLQYRI KKLHLHI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..389] PSI-BLAST 72.522879 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
    2 View Details [390..467] PSI-BLAST 74.154902 Crystal structure of a sigma54-activator suggests the mechanism for the conformational switch necessary for sigma54 binding

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein histidine kinase activity
    		•  2.35011582062573 bayes_pls_golite062009
  • two-component sensor activity
    		•  2.32303301074957 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  2.28838869071567 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.45919623810582 bayes_pls_golite062009
  • catalytic activity
    		•  1.37148167194523 bayes_pls_golite062009
  • binding
    		•  1.30574971150356 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18053993810305 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.900561861643259 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.530058973650498 bayes_pls_golite062009
  • DNA binding
    		•  0.460315660888175 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0324692870996578 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0319901144782286 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.0199205367873159 bayes_pls_golite062009
  • nucleotide binding
    		•  0.00540039127746217 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle