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Protein Overview: gi|39998144, gi|...

General Information:
Name(s) found: gi|39998144 [NCBI NR]
gi|39985090 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|39998144|ref|NP_954095.1| RNA polymerase sigma factor for flagellar operon [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39985090|gb|AAR36445.1| RNA polymerase sigma factor for flagellar operon [Geobacter sulfurreducens PCA] [NCBI NR]
    • Organism: Geobacter sulfurreducens PCA
    Length: 250 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    transcription initiation [ISSLink to PubMed article]
    Molecular Function: sigma factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCMLKAYEQ EAQRSVAQTR DELIVNHLPL VKFLVGRIAS QLPPHLDQED LMSAAIIGLI  60
   61 TAAERFDPTR GVQFKTFAEQ RIRGTIIDEL RSQDWLTRSL RDKFKKLEKE FVLLEHQLGR 120
  121 NPTSEEVATA LKMSVDEYYQ MLEEIHLLSF VSLDESWEDD DGSPFGLLDI LADTSIENPQ 180
  181 SQLMARQMLD SLTESIESLP EKERLVITLY YYEELNLKEI GAVLELSESR ISQLHSQAIV 240
  241 RLRAKMKNMR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 27.69897 Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  0.503184853376433 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle