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Protein Overview: gi|39982552, gi|...

General Information:
Name(s) found: gi|39995788 [NCBI NR]
gi|39982552 [NCBI NR]
Description(s) found:
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  • gi|39995788|ref|NP_951739.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] [NCBI NR]
  • gi|39982552|gb|AAR34012.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] [NCBI NR]
  • DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA]gi|39982552|gb|AAR34012.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] [nrdb_11152004_Chlamydomonas]
  • DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] [nr-271106-contam.fasta]
    • Organism: Geobacter sulfurreducens PCA
    Length: 215 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: two-component signal transduction system (phosphorelay) [ISSLink to PubMed article]
    regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]
    two-component response regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRVLLVDDH RIVLEGLRAL VSEHSDLEVV GVACDGATAI ELTRQLRPDV VVMDITMPGM  60
   61 NGIEATRRIV AEFPRTRVLI LSMESERRFV LEVLKTGAHG YLLKDCSQDE LVSAIRHVAG 120
  121 GEPYLGPRIT EMIIRAYMER IPDDTLLTHT LLSLREREVL QLIAAGKSTK EIAFAFGVSL 180
  181 KTIETQRHSI MKKLNLYSVA ELTKYAIREG LTPLR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..215] PSI-BLAST 31.69897 Nitrate/nitrite response regulator (NarL); Nitrate/nitrite response regulator (NarL), receiver domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • two-component response regulator activity
    		•  7.02872640261738 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.23016166796951 bayes_pls_golite062009
  • signal transducer activity
    		•  4.51666042720644 bayes_pls_golite062009
  • molecular transducer activity
    		•  4.51666042720644 bayes_pls_golite062009
  • DNA binding
    		•  2.75354350283069 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.67056525675208 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  2.35011582062573 bayes_pls_golite062009
  • two-component sensor activity
    		•  2.32303301074957 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  2.28838869071567 bayes_pls_golite062009
  • transcription factor activity
    		•  2.12579037300919 bayes_pls_golite062009
  • binding
    		•  1.22427537074115 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle