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Protein Overview: gi|29541523, gi|...

General Information:
Name(s) found: gi|29654257 [NCBI NR]
gi|29541523 [NCBI NR]
Description(s) found:
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  • gi|29654257|ref|NP_819949.1| OmpA-like transmembrane domain-containing protein [Coxiella burnetii RSA 493] [NCBI NR]
  • gi|29541523|gb|AAO90463.1| OmpA-like transmembrane domain protein [Coxiella burnetii RSA 493] [NCBI NR]
  • ompA-like transmembrane domain protein [Coxiella burnetii RSA 493]gi|29541523|gb|AAO90463.1| ompA-like transmembrane domain protein [Coxiella burnetii RSA 493] [nrdb_11152004_Chlamydomonas]
  • ompA-like transmembrane domain protein [Coxiella burnetii RSA 493] [nr-271106-contam.fasta]
    • Organism: Coxiella burnetii RSA 493
    Length: 189 amino acids

    Gene Ontology:
    Cellular Component: cell outer membrane [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIVLALIAT VAVGLGTESL AQGAAVEEES GLYTNGDLVG VKPKVTNLGS IDDGGIIYKA  60
   61 GGGYQFNKYF ALEGNYTRFP NLKSGRVIPE KSNTEIYAAG KAIIPLKKGY NVFAKIGAAQ 120
  121 VSITTVPGME DVSGINLSNT HSEILPYGGL GVGYSVSQKV GFNLQFAGTP EGDNIPARYA 180
  181 VMGGLSYNF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..189] PSI-BLAST 31.522879 Outer membrane protein A (OMPA) transmembrane domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • porin activity
    		•  3.72603691775929 bayes_pls_golite062009
  • wide pore channel activity
    		•  2.56764837317779 bayes_pls_golite062009
  • channel activity
    		•  0.500502774665998 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.500502774665998 bayes_pls_golite062009
  • transporter activity
    		•  0.32956132877646 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.31625101261287 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle