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Protein Overview: gi|29541114, gi|...

General Information:
Name(s) found: gi|29653851 [NCBI NR]
gi|29541114 [NCBI NR]
Description(s) found:
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  • gi|29653851|ref|NP_819543.1| trp operon repressor [Coxiella burnetii RSA 493] [NCBI NR]
  • gi|29541114|gb|AAO90057.1| trp operon repressor [Coxiella burnetii RSA 493] [NCBI NR]
  • trp operon repressor [Coxiella burnetii RSA 493]gi|29541114|gb|AAO90057.1| trp operon repressor [Coxiella burnetii RSA 493] [nrdb_11152004_Chlamydomonas]
  • trp operon repressor [Coxiella burnetii RSA 493] [nr-271106-contam.fasta]
  • Trp operon repressor [Coxiella burnetii RSA 493] [nr-271106-contam.fasta]
    • Organism: Coxiella burnetii RSA 493
    Length: 114 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    tryptophan metabolic process [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]
    specific transcriptional repressor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFFSHCLI PKRLVYGECK VPLKSEGWRG FLTLCQKAET VDQLDELFGL LFTLEEKEQL  60
   61 ALRVELVRAL LRGEKPQREI AHDLNISIAK ITRGSNALKT TSDKIKSFIK KYLP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..114] PSI-BLAST 27.221849 Trp repressor, TrpR

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  1.49137583648289 bayes_pls_golite062009
  • DNA binding
    		•  1.47393364683412 bayes_pls_golite062009
  • binding
    		•  0.833538516780913 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.47954468042493 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle