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Protein Overview: gi|29653658, gi|...

General Information:
Name(s) found: gi|29653658 [NCBI NR]
gi|29540920 [NCBI NR]
Description(s) found:
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  • gi|29653658|ref|NP_819350.1| OmpA-like transmembrane domain-containing protein [Coxiella burnetii RSA 493] [NCBI NR]
  • gi|29540920|gb|AAO89864.1| outer membrane protein [Coxiella burnetii RSA 493] [NCBI NR]
  • ompA-like transmembrane domain protein [Coxiella burnetii RSA 493]gi|29540920|gb|AAO89864.1| ompA-like transmembrane domain protein [Coxiella burnetii RSA 493] [nrdb_11152004_Chlamydomonas]
  • ompA-like transmembrane domain protein [Coxiella burnetii RSA 493] [nr-271106-contam.fasta]
    • Organism: Coxiella burnetii RSA 493
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: cell outer membrane [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKKLVTLA TLTMASVGVT SAALAGGPDY VPAPSYAGVY LEGNLGYAYR PWRKDATTVV  60
   61 GLAKQARLLG SSSRGNGGFT FGADLGYQFN QYFAVEGGWF YLPKVKFTTT GVVNGLAAGT 120
  121 YTVKSGMAYA ALKGMAPVYE NTYVFGKLGV AYTYNRANAG LPTNKIPATF GSRSRFWNPL 180
  181 FAAGVQYYFT PNWSVNAQYT FVPGYRNASS KRFVAPVTHL FTVGLGYKFL M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..231] PSI-BLAST 30.154902 Outer membrane protein A (OMPA) transmembrane domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • porin activity
    		•  3.72603691775929 bayes_pls_golite062009
  • wide pore channel activity
    		•  2.56764837317779 bayes_pls_golite062009
  • channel activity
    		•  0.500502774665998 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.500502774665998 bayes_pls_golite062009
  • transporter activity
    		•  0.32956132877646 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.31625101261287 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle