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Protein Overview: gi|24375047, gi|...

General Information:
Name(s) found: gi|24376359 [NCBI NR]
gi|24376351 [NCBI NR]
gi|24376334 [NCBI NR]
gi|24375368 [NCBI NR]
gi|24375047 [NCBI NR]
gi|24350192 [NCBI NR]
gi|24349793 [NCBI NR]
gi|24345270 [NCBI NR]
gi|24345259 [NCBI NR]
gi|24345236 [NCBI NR]
Description(s) found:
Found 15 descriptions.
SHOW ALL
  • gi|24376359|ref|NP_720467.1| ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24376351|ref|NP_720459.1| ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24376334|ref|NP_720442.1| ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24375368|ref|NP_719411.1| ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24375047|ref|NP_719090.1| ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350192|gb|AAN56855.1|AE015820_8 ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349793|gb|AAN56534.1|AE015790_5 ISSod13, transposase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345270|gb|AAN53067.1| ISSod13 transposase, TnpA_ISSod13_5 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345259|gb|AAN53059.1| ISSod13 transposase, TnpA_ISSod13_4 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345236|gb|AAN53042.1| ISSod13 transposase, TnpA_ISSod13_3 [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 346 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transposition, DNA-mediated [ISSLink to PubMed article]
    Molecular Function: transposase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHSNNPIIK HKTGLLNLAE ELSNVSRACK VMGVSRDTFY RYRELVDDGG VDALIEKSRR  60
   61 SPNLKNRVEE AVEQAVMEYA IEFPAHGQHR TSNELRKKGV FVSGSGVRSI WLRHDLENFK 120
  121 KRLKALEAKV ARDGIQLTDE QIAALERKKH DDEACGEIET AHPGYLGSQD TFYVGNLKGV 180
  181 GRIYQQTYVD TYCKVAHCKL YTTKTPITAA DLLNDKVLPF YESQQLPVLR ILTDRGTEYC 240
  241 GKVEHHDYQL YLAINDIDHT KTKAMSPQTN GICERFHKTI LNEFYQVTFR KKLYQTLEEL 300
  301 QKDLDEWLSY YNNERTHQGK MCNGRTPVET LIDGKRVWAE KNLTRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] FFAS03 3.82 Paired protein (prd)
    2 View Details [99..346] PSI-BLAST 29.0 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  1.49632014394309 bayes_pls_golite062009
  • DNA binding
    		•  1.3191703194956 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.24039515448759 bayes_pls_golite062009
  • binding
    		•  0.993284934100708 bayes_pls_golite062009
  • transcription factor activity
    		•  0.793064804495389 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nuclease activity
    		•  1.81796593394339 bayes_pls_golite062009
  • exonuclease activity
    		•  1.64964907710028 bayes_pls_golite062009
  • catalytic activity
    		•  1.62277843225829 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.58702937619673 bayes_pls_golite062009
  • hydrolase activity
    		•  1.41857676124086 bayes_pls_golite062009
  • transposase activity
    		•  1.09803761537443 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.71352601607444 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.63299586096139 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.62821439153618 bayes_pls_golite062009
  • endonuclease activity
    		•  0.150927275899469 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle