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Protein Overview: gi|24376309, gi|...

General Information:
Name(s) found: gi|24376309 [NCBI NR]
gi|24345203 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24376309|ref|NP_720417.1| resolvase family site-specific recombinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345203|gb|AAN53017.1| recombinase, resolvase family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 196 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: site-specific recombinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVGYARVS STGQSLEVQL SKLHRAECNK IYQEKRSGRT AERSEFQSCM SYLREGDTLV  60
   61 VTRLDRLARS VVHLAQIASR FQSEGIDLLV IDQNIDTSTS TGRLMFNMLA AIAEFENDLR 120
  121 TERQAEGIAK AHENGVKFGR PVKLTDTLKQ AIYDKRAEGA TIGQLAKEYH LGEASIYRAL 180
  181 NSVKSTQEIT SKLISN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] PSI-BLAST 40.09691 gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • site-specific recombinase activity
    		•  3.0240363733074 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.76956337706487 bayes_pls_golite062009
  • DNA binding
    		•  1.58100039759954 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.46839493313894 bayes_pls_golite062009
  • catalytic activity
    		•  1.20658247466773 bayes_pls_golite062009
  • transcription factor activity
    		•  1.0707787742149 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle