YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376309, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376309, gi|....

Description	E-value	Query Range	Subject Range
gi\|209483441 - gi\|209483441\|gb\|ACI47260.1\| InvA [Klebsiella pneumoniae] gi\|156936517, gi... - gi\|156936517\|ref\|YP_001440432.1\| hypothetical protein ESA_pESA2p06563 [Enterobacter sakazakii ATCC B... gi\|34013343, gi\|... - gi\|34500522\|ref\|NP_904293.1\| DNA invertase [Delftia acidovorans], gi\|34013343\|dbj\|BAC82016.1\| DNA in... gi\|46319637, gi\|... - gi\|67543486\|ref\|ZP_00421418.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|51470645, gi\|... - gi\|51492602\|ref\|YP_067899.1\| DNA recombinase [Aeromonas punctata], gi\|51470645\|emb\|CAG15136.1\| DNA r... gi\|217507883, gi... - gi\|217970556\|ref\|YP_002355790.1\| Resolvase domain protein [Thauera sp. MZ1T], gi\|217507883\|gb\|ACK548...	200.0	[0..3]	[178..2]
gi\|49483990, gi\|... - gi\|49483990\|ref\|YP_041214.1\| resolvase [Staphylococcus aureus subsp. aureus MRSA252], gi\|49242119\|em... gi\|221141712 - gi\|221141712\|ref\|ZP_03566205.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6009] gi\|221138408 - gi\|221138408\|ref\|ZP_03563210.1\| resolvase [Staphylococcus aureus subsp. aureus str. JKD6008] gi\|22476847 - gi\|22476847\|gb\|AAM97336.1\|AF426834_2 resolvase/integrase BinL [Staphylococcus epidermidis] gi\|421394 - gi\|421394\|pir\|\|S11781 DNA-invertase - Staphylococcus aureus transposon Tn552 gi\|227245678, gi... - gi\|227557942\|ref\|ZP_03987989.1\| recombinase [Staphylococcus aureus subsp. aureus MN8], gi\|227245678\|...	200.0	[0..1]	[196..1]
gi\|253316022 - gi\|253316022\|ref\|ZP_04839235.1\| Tn552 DNA invertase BinR [Staphylococcus aureus subsp. aureus str. C... BINR_STAAU - Transposon Tn552 DNA-invertase BinR OS=Staphylococcus aureus GN=resR PE=3 SV=1	199.0	[0..1]	[191..1]
gi\|110829362, gi... - gi\|121608377\|ref\|YP_996184.1\| resolvase domain-containing protein [Verminephrobacter eiseniae EF01-2...	198.0	[0..3]	[178..2]
gi\|11230706 - gi\|11230706\|emb\|CAC16668.1\| resolvase/integrase [Staphylococcus haemolyticus]	198.0	[0..1]	[191..1]
gi\|66862675, gi\|... - gi\|66968593\|ref\|YP_245470.1\| putative DNA invertase [Pseudomonas aeruginosa], gi\|66862675\|emb\|CAI469...	198.0	[0..3]	[178..2]
gi\|13793989 - gi\|13793989\|gb\|AAK38454.1\| resolvase/integrase BinR [Staphylococcus epidermidis]	198.0	[0..1]	[191..1]
gi\|19352370, gi\|... - gi\|19352370\|ref\|NP_598128.1\| invertase-like protein [uncultured bacterium], gi\|19352365\|ref\|NP_59812...	197.0	[0..3]	[178..2]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRVGYARVS STGQSLEVQL SKLHRAECNK IYQEKRSGRT AERSEFQSCM SYLREGDTLV  60
   61 VTRLDRLARS VVHLAQIASR FQSEGIDLLV IDQNIDTSTS TGRLMFNMLA AIAEFENDLR 120
  121 TERQAEGIAK AHENGVKFGR PVKLTDTLKQ AIYDKRAEGA TIGQLAKEYH LGEASIYRAL 180
  181 NSVKSTQEIT SKLISN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.09691
Match:	1gdtA
Description:	gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	3.0240363733074	bayes_pls_golite062009
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
catalytic activity	1.20658247466773	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: