Protein Overview: gi|24350993, gi|...

General Information:
Name(s) found:	gi\|24375992 [NCBI NR] gi\|24350993 [NCBI NR]
Description(s) found: Found 4 descriptions. SHOW ALL	gi\|24375992\|ref\|NP_720035.1\| formate dehydrogenase, C subunit, putative [Shewanella oneidensis MR-1] [NCBI NR] gi\|24350993\|gb\|AAN57479.1\|AE015884_1 formate dehydrogenase, C subunit, putative [Shewanella oneidensis MR-1] [NCBI NR]
Organism:	Shewanella oneidensis MR-1
Length:	327 amino acids
Gene Ontology:
Cellular Component:	formate dehydrogenase complex [ISS]
Biological Process:	anaerobic respiration [ISS]
Molecular Function:	electron carrier activity [ISS] formate dehydrogenase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKWFKHIGL AIALLFSAVC LANGGDGQAI QPQAADAQIW AQLKDGATGY TASQSEFHAQ  60
   61 PINTYDLRVL ELRSDWLAPA LMAALFGMII IFVLFIKVNG ISKLHHGFSG KMVYRWSKFD 120
  121 VSIHWLGAIP CLLLILTGLV LLAGRFFFQP WLGEGFWAGL VYGAKQVHDV MAIPFMIGWA 180
  181 LMITLWAKNQ LPKMYDVKWF MVVGGYINFG PFKGKHPDAG FANAGEKMWF WAFALFGLII 240
  241 SASGMLLLFP NLFEPSRTLS LIALVLHSVS AIVICAFSIV HIFMATVMSE GGMECMVSGY 300
  301 CDENWASQHH NLWFDEIKAN GTLQYKE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..109]	deduced	N/A	No confident structure predictions are available.
2	View Details	[110..327]	PSI-BLAST	43.0	Formate dehydrogenase N, cytochrome (gamma) subunit

Functions predicted (by domain):

#

Gene Ontology predictions

1

No functions predicted.

2

Term	Confidence	Notes
formate dehydrogenase activity	12.0031413212101	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.74953039117709	bayes_pls_golite062009
oxidoreductase activity	6.50321219171766	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	6.34988495153085	bayes_pls_golite062009
electron carrier activity	5.12151222577784	bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity	4.22830694615406	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	4.22830694615406	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.0059637271275	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.84393168925676	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.81757741812263	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.03994437587765	bayes_pls_golite062009
cation transmembrane transporter activity	2.71722961068288	bayes_pls_golite062009
ion transmembrane transporter activity	2.41992215050809	bayes_pls_golite062009
catalytic activity	1.19342057724506	bayes_pls_golite062009
binding	0.00724604692107611	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle