YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350993, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.93
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	76	0.95
Transmembrane Helix	77	101	0.88
Cytoplasmic	102	120	0.98
Transmembrane Helix	121	144	0.93
Non-Cytoplasmic	145	166	0.87
Transmembrane Helix	167	187	0.92
Cytoplasmic	188	194	0.90
Transmembrane Helix	195	212	0.71
Non-Cytoplasmic	213	228	0.68
Transmembrane Helix	229	252	0.89
Cytoplasmic	253	260	0.68
Transmembrane Helix	261	284	0.90
Non-Cytoplasmic	285	327	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKWFKHIGL AIALLFSAVC LANGGDGQAI QPQAADAQIW AQLKDGATGY TASQSEFHAQ  60
   61 PINTYDLRVL ELRSDWLAPA LMAALFGMII IFVLFIKVNG ISKLHHGFSG KMVYRWSKFD 120
  121 VSIHWLGAIP CLLLILTGLV LLAGRFFFQP WLGEGFWAGL VYGAKQVHDV MAIPFMIGWA 180
  181 LMITLWAKNQ LPKMYDVKWF MVVGGYINFG PFKGKHPDAG FANAGEKMWF WAFALFGLII 240
  241 SASGMLLLFP NLFEPSRTLS LIALVLHSVS AIVICAFSIV HIFMATVMSE GGMECMVSGY 300
  301 CDENWASQHH NLWFDEIKAN GTLQYKE