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Protein Overview: gi|24375990, gi|...

General Information:
Name(s) found: gi|24375990 [NCBI NR]
gi|24350989 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375990|ref|NP_720033.1| formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350989|gb|AAN57477.1|AE015883_8 formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 950 amino acids

    Gene Ontology:
    Cellular Component: formate dehydrogenase complex [ISSLink to PubMed article]
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: formate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTRKSDVA QVANKPTLGI SRRQFMKQAG IATGGIAAAS LMGTGMMRRA EAKDVPYDAP  60
   61 IEIKRTICSA CAVGCGLYAE VQNGVWTGQE PAFDHPFNAG GHCAKGAALR EHGHGEKRLK 120
  121 YPMKLVDGKW KKISWEDAIN EVGDQMLNIR KESGPDSVYF MGSAKFSNEG CYAYRKLAAM 180
  181 WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDIQNA NAIFLIGANP AEAHPVSMQH 240
  241 ILIAKEKNNA KIIVVDPRFS RTAAHSDLHC AIRPGTDIPF IYGMLWHIFE NGWEDKTFIQ 300
  301 HRVFEMETIR AEVKKFPPKE VANITGVSEE VVYQAAKLMA ENRPGTVIWC MGGTQHHVGN 360
  361 ANTRAYCILQ LALGNMGVSG GGTNIFRGHD NVQAATDLGL LFDNLPGYYG LTTAAWEHWT 420
  421 NVWELDMEWM KSRFDHGTYL GREPMTTPGM PCSRWFDGVL LEKDKLAQKD NIRMAFFWGQ 480
  481 SVNTGTRQRD VRDALDKLDT VVVVDPFPTI AGIMHSRKNG VYLLPACTQF EASGAVSNSG 540
  541 RSIQWREQVI QPLFESKNDI EIMYMLAKKV GISEQWAKRW NIAGNMPVVE DISREINRGM 600
  601 WTIGYTGQSP ERIKQHTQNW GTFSNKTLEA AGGPCKGETY GLPWPCWGTP EAKHPGTQIL 660
  661 YNQDKHVKDG GGNFRARYGV EYNGKNLLAE GTFSKGAEIQ DGYPEFSDKL LKQLGWWDDL 720
  721 TAEEKAAAEG KNWKTDLSGG IVRVAIKHGC IPFGNAKARC IVWTFPDQAP VHREPIYTAR 780
  781 RDLVAKYPTY DDMQVHRLPT LYKTLQENDL SGKYPLVMTS GRLVEYEGGG EESRCNPWLA 840
  841 ELQQEMFIEI SPADAADRAI RNGEFVWVEG AEGGRIKVQA MVTPRVAPGV TFMPYHFAGV 900
  901 MHGESLAANY PEGTVPYVIG ESCNTALTYG YDPVTQMQET KASLCQIVKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..950] PSI-BLAST 166.0 Formate dehydrogenase N, alpha subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  12.8557183783781 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  7.57161550681607 bayes_pls_golite062009
  • oxidoreductase activity
    		•  7.18948979839656 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  7.16311737169172 bayes_pls_golite062009
  • electron carrier activity
    		•  2.49660481239302 bayes_pls_golite062009
  • nitrate reductase activity
    		•  2.20600951698793 bayes_pls_golite062009
  • catalytic activity
    		•  1.93875927205186 bayes_pls_golite062009
  • trimethylamine-N-oxide reductase activity
    		•  1.53833487723248 bayes_pls_golite062009
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  1.12492792673137 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  1.10002765979078 bayes_pls_golite062009
  • molybdenum ion binding
    		•  1.06869099200697 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  0.552726587326143 bayes_pls_golite062009
  • metal cluster binding
    		•  0.552726587326143 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.134493772161849 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.45

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle