YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375990, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	950 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375990, gi|....

Description	E-value	Query Range	Subject Range
gi\|78684377, gi\|... - gi\|78684377\|ref\|ZP_00849161.1\| Twin-arginine translocation pathway signal [Shewanella sp. ANA-3], gi...	816.0	[0..1]	[950..1]
gi\|114049281, gi... - gi\|78689176\|ref\|ZP_00853840.1\| Twin-arginine translocation pathway signal [Shewanella sp. MR-7], gi\|...	815.0	[0..1]	[950..1]
gi\|82497117, gi\|... - gi\|82497117\|ref\|ZP_00882676.1\| Twin-arginine translocation pathway signal [Shewanella sp. MR-4], gi\|...	815.0	[0..1]	[950..1]
gi\|146291440, gi... - gi\|77814910\|ref\|ZP_00814160.1\| Twin-arginine translocation pathway signal [Shewanella putrefaciens C...	812.0	[0..1]	[950..1]
gi\|124548636, gi... - gi\|124548636\|ref\|ZP_01707223.1\| Twin-arginine translocation pathway signal [Shewanella putrefaciens ... gi\|82741660, gi\|... - gi\|82741660\|ref\|ZP_00904376.1\| Twin-arginine translocation pathway signal [Shewanella sp. W3-18-1], ...	811.0	[0..1]	[950..1]
gi\|127510994, gi... - gi\|78366816\|ref\|ZP_00837093.1\| Twin-arginine translocation pathway signal [Shewanella sp. PV-4], gi\|...	804.0	[0..1]	[950..1]
gi\|75855489, gi\|... - gi\|75855489\|ref\|ZP_00763138.1\| COG0243: Anaerobic dehydrogenases, typically selenocysteine-containin...	804.0	[0..1]	[950..1]
gi\|91223724, gi\|... - gi\|91223724\|ref\|ZP_01258988.1\| putative formate dehydrogenase large subunit [Vibrio alginolyticus 12...	804.0	[0..1]	[950..1]
SO4509 - formate dehydrogenase alpha subunit gi\|24350985, gi\|... - gi\|24375986\|ref\|NP_720029.1\| formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1], gi\|2...	803.0	[0..1]	[950..1]

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Predicted Domain #1

Region A:
Residues: [1-950]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTRKSDVA QVANKPTLGI SRRQFMKQAG IATGGIAAAS LMGTGMMRRA EAKDVPYDAP  60
   61 IEIKRTICSA CAVGCGLYAE VQNGVWTGQE PAFDHPFNAG GHCAKGAALR EHGHGEKRLK 120
  121 YPMKLVDGKW KKISWEDAIN EVGDQMLNIR KESGPDSVYF MGSAKFSNEG CYAYRKLAAM 180
  181 WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDIQNA NAIFLIGANP AEAHPVSMQH 240
  241 ILIAKEKNNA KIIVVDPRFS RTAAHSDLHC AIRPGTDIPF IYGMLWHIFE NGWEDKTFIQ 300
  301 HRVFEMETIR AEVKKFPPKE VANITGVSEE VVYQAAKLMA ENRPGTVIWC MGGTQHHVGN 360
  361 ANTRAYCILQ LALGNMGVSG GGTNIFRGHD NVQAATDLGL LFDNLPGYYG LTTAAWEHWT 420
  421 NVWELDMEWM KSRFDHGTYL GREPMTTPGM PCSRWFDGVL LEKDKLAQKD NIRMAFFWGQ 480
  481 SVNTGTRQRD VRDALDKLDT VVVVDPFPTI AGIMHSRKNG VYLLPACTQF EASGAVSNSG 540
  541 RSIQWREQVI QPLFESKNDI EIMYMLAKKV GISEQWAKRW NIAGNMPVVE DISREINRGM 600
  601 WTIGYTGQSP ERIKQHTQNW GTFSNKTLEA AGGPCKGETY GLPWPCWGTP EAKHPGTQIL 660
  661 YNQDKHVKDG GGNFRARYGV EYNGKNLLAE GTFSKGAEIQ DGYPEFSDKL LKQLGWWDDL 720
  721 TAEEKAAAEG KNWKTDLSGG IVRVAIKHGC IPFGNAKARC IVWTFPDQAP VHREPIYTAR 780
  781 RDLVAKYPTY DDMQVHRLPT LYKTLQENDL SGKYPLVMTS GRLVEYEGGG EESRCNPWLA 840
  841 ELQQEMFIEI SPADAADRAI RNGEFVWVEG AEGGRIKVQA MVTPRVAPGV TFMPYHFAGV 900
  901 MHGESLAANY PEGTVPYVIG ESCNTALTYG YDPVTQMQET KASLCQIVKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	166.0
Match:	1kqfA
Description:	Formate dehydrogenase N, alpha subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	12.8557183783781	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.57161550681607	bayes_pls_golite062009
oxidoreductase activity	7.18948979839656	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	7.16311737169172	bayes_pls_golite062009
electron carrier activity	2.49660481239302	bayes_pls_golite062009
nitrate reductase activity	2.20600951698793	bayes_pls_golite062009
catalytic activity	1.93875927205186	bayes_pls_golite062009
trimethylamine-N-oxide reductase activity	1.53833487723248	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	1.12492792673137	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	1.10002765979078	bayes_pls_golite062009
molybdenum ion binding	1.06869099200697	bayes_pls_golite062009
iron-sulfur cluster binding	0.552726587326143	bayes_pls_golite062009
metal cluster binding	0.552726587326143	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.134493772161849	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: