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Protein Overview: gi|24375980, gi|...

General Information:
Name(s) found: gi|24375980 [NCBI NR]
gi|24350976 [NCBI NR]
Description(s) found:
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  • gi|24375980|ref|NP_720023.1| formate dehydrogenase accessory protein FdhD, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350976|gb|AAN57467.1|AE015882_6 formate dehydrogenase accessory protein FdhD, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • formate dehydrogenase accessory protein FdhD, putative [Shewanella oneidensis MR-1]gi|24350976|gb|AAN57467.1| formate dehydrogenase accessory protein FdhD, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • formate dehydrogenase accessory protein FdhD, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 249 amino acids

    Gene Ontology:
    Cellular Component: formate dehydrogenase complex [ISSLink to PubMed article]
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: formate dehydrogenase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDKHVACER PLTVYLNWRP IVTLMTLGAK PESLALGYLK NQGFISDVSQ LESVIVDWGV  60
   61 NSAAVLTREQ TADIDKKLSE KTVTSGCGQG TVYGSFMQDL EGIQLPRPSL KQSTLYSLLK 120
  121 NINEYNDTYK NAGAVHGCGV CEADQILAFV EDVGRHNAVD TLAGDMWLAQ DRGDNKIFYT 180
  181 TGRLTSEMVI KVAKMGIPVL LSRSGVTQMG LELAQNLGIT IIARAKGRHF LVYHGSENLE 240
  241 FDVNTSPSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..249] PSI-BLAST 52.0 No description for 2pw9A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  11.6538357294979 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  6.39976727113281 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  5.99996975993203 bayes_pls_golite062009
  • oxidoreductase activity
    		•  5.01622492889917 bayes_pls_golite062009
  • catalytic activity
    		•  1.70756445127105 bayes_pls_golite062009
  • electron carrier activity
    		•  0.851003321957332 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  0.113989053833271 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle