YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375980, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375980, gi|....

Description	E-value	Query Range	Subject Range
gi\|228637347, gi... - gi\|229146136\|ref\|ZP_04274512.1\| Protein fdhD [Bacillus cereus BDRD-ST24], gi\|228637347\|gb\|EEK93801.1... gi\|229128841, gi... - gi\|229128841\|ref\|ZP_04257817.1\| Protein fdhD [Bacillus cereus BDRD-Cer4], gi\|228654546\|gb\|EEL10408.1... gi\|229047249, gi... - gi\|229047249\|ref\|ZP_04192849.1\| Protein fdhD [Bacillus cereus AH676], gi\|228724116\|gb\|EEL75461.1\| Pr... gi\|29897226, gi\|... - gi\|30021671\|ref\|NP_833302.1\| formate dehydrogenase accessory protein [Bacillus cereus ATCC 14579], g...	304.0	[0..2]	[239..21]
gi\|254744832 - gi\|254744832\|ref\|ZP_05202510.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. Kru... gi\|254752926 - gi\|254752926\|ref\|ZP_05204962.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. Vol... gi\|254759198 - gi\|254759198\|ref\|ZP_05211224.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. Aus... gi\|49186369, gi\|... - gi\|49186369\|ref\|YP_029621.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. Sterne... gi\|164713300, gi... - gi\|165871089\|ref\|ZP_02215740.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis str... gi\|47551894, gi\|... - gi\|47778189\|ref\|YP_020261.2\| formate dehydrogenase accessory protein [Bacillus anthracis str. 'Ames ... gi\|167528296, gi... - gi\|167636273\|ref\|ZP_02394575.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis str... gi\|30258154, gi\|... - gi\|30263519\|ref\|NP_845896.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. Ames],... gi\|167511414, gi... - gi\|167640546\|ref\|ZP_02398808.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis str... gi\|65320846, gi\|... - gi\|65320846\|ref\|ZP_00393805.1\| COG1526: Uncharacterized protein required for formate dehydrogenase a... gi\|170688407, gi... - gi\|170688407\|ref\|ZP_02879615.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis str... gi\|170708154, gi... - gi\|170708154\|ref\|ZP_02898601.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis str... gi\|177652454, gi... - gi\|177652454\|ref\|ZP_02934921.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis str... gi\|190565081, gi... - gi\|190565081\|ref\|ZP_03018002.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis Tsi... gi\|195993241, gi... - gi\|196034167\|ref\|ZP_03101577.1\| formate dehydrogenase accessory protein FdhD [Bacillus cereus W], gi... gi\|227813601, gi... - gi\|227813601\|ref\|YP_002813610.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis st... gi\|229267691, gi... - gi\|229603283\|ref\|YP_002867764.1\| formate dehydrogenase accessory protein FdhD [Bacillus anthracis st... gi\|254686136 - gi\|254686136\|ref\|ZP_05149995.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. CNE... gi\|254723533 - gi\|254723533\|ref\|ZP_05185321.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. A10... gi\|254738608 - gi\|254738608\|ref\|ZP_05196311.1\| formate dehydrogenase accessory protein [Bacillus anthracis str. Wes...	304.0	[0..2]	[239..21]
gi\|42782635, gi\|... - gi\|42782635\|ref\|NP_979882.1\| formate dehydrogenase accessory protein [Bacillus cereus ATCC 10987], g...	303.0	[0..2]	[239..21]
gi\|52141965, gi\|... - gi\|52141965\|ref\|YP_084864.1\| formate dehydrogenase accessory protein [Bacillus cereus E33L], gi\|5197...	302.0	[0..2]	[239..21]
gi\|49329833, gi\|... - gi\|49478277\|ref\|YP_037650.1\| formate dehydrogenase accessory protein [Bacillus thuringiensis serovar...	301.0	[0..2]	[239..21]
gi\|229077901, gi... - gi\|229077901\|ref\|ZP_04210512.1\| Protein fdhD [Bacillus cereus Rock4-2], gi\|228705419\|gb\|EEL57794.1\| ... gi\|228795986, gi... - gi\|228963682\|ref\|ZP_04124825.1\| Protein fdhD [Bacillus thuringiensis serovar sotto str. T04001], gi\|... gi\|74492688, gi\|... - gi\|75759830\|ref\|ZP_00739906.1\| FdhD protein (fdsC) [Bacillus thuringiensis serovar israelensis ATCC ... gi\|228951081, gi... - gi\|228951081\|ref\|ZP_04113199.1\| Protein fdhD [Bacillus thuringiensis serovar kurstaki str. T03a001],... gi\|228860306, gi... - gi\|228899275\|ref\|ZP_04063538.1\| Protein fdhD [Bacillus thuringiensis IBL 4222], gi\|228860306\|gb\|EEN0...	299.0	[0..4]	[240..46]
gi\|47567168, gi\|... - gi\|47567168\|ref\|ZP_00237884.1\| formate dehydrogenase family accessory protein FdhD [Bacillus cereus ...	298.0	[0..4]	[240..23]
gi\|46913486, gi\|... - gi\|54309054\|ref\|YP_130074.1\| putative formate dehydrogenase accessory protein [Photobacterium profun...	297.0	[0..1]	[248..29]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDKHVACER PLTVYLNWRP IVTLMTLGAK PESLALGYLK NQGFISDVSQ LESVIVDWGV  60
   61 NSAAVLTREQ TADIDKKLSE KTVTSGCGQG TVYGSFMQDL EGIQLPRPSL KQSTLYSLLK 120
  121 NINEYNDTYK NAGAVHGCGV CEADQILAFV EDVGRHNAVD TLAGDMWLAQ DRGDNKIFYT 180
  181 TGRLTSEMVI KVAKMGIPVL LSRSGVTQMG LELAQNLGIT IIARAKGRHF LVYHGSENLE 240
  241 FDVNTSPSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	2pw9A
Description:	No description for 2pw9A was found.

Predicted functions:

Term	Confidence	Notes
formate dehydrogenase activity	11.6538357294979	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.39976727113281	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	5.99996975993203	bayes_pls_golite062009
oxidoreductase activity	5.01622492889917	bayes_pls_golite062009
catalytic activity	1.70756445127105	bayes_pls_golite062009
electron carrier activity	0.851003321957332	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	0.113989053833271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: