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Protein Overview: gi|24375947, gi|...

General Information:
Name(s) found: gi|24375947 [NCBI NR]
gi|24350935 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375947|ref|NP_719990.1| alcohol dehydrogenase, iron-containing [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350935|gb|AAN57434.1|AE015879_4 alcohol dehydrogenase, iron-containing [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 385 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: fermentation [ISSLink to PubMed article]
    Molecular Function: iron ion binding [ISSLink to PubMed article]
    alcohol dehydrogenase activity, iron-dependent [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNFTYYNPT RIHFGKNTIA EIDTLIPSNA RVMVLFGGSS AKRTGTLAEV KQALGKRFVV  60
   61 EFEGIEPNPT YETLMLAVAQ VRELNIDFLL AVGGGSVIDG TKFVAAAAVF EGEPWDILTS 120
  121 WGAKVTKAMP FGSVLTLPAT GSEMNNASVV TRKSLKAKLP FRNDLVYPQF SILDPTKTFT 180
  181 LPERQVANGV VDAFVHITEQ YLTYPVNAAV QDRFAEGLLQ ILIELGPQAL TKPEDYDIRA 240
  241 NLMWVATMAL NGTIATGVPH DWATHMIGHE LTALYDIDHA RTLAIVLPAL LRCTKAAKHE 300
  301 KLLQFADRVW HINTGSEDER IEAAIAKTQA FFEAMGIATH LSGYDLGKEA VDAVVGQLEK 360
  361 HGMVALGEHG NIDPAMSRNI LTLAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..385] PSI-BLAST 85.0 STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • alcohol dehydrogenase (NAD) activity
    		•  4.00011629375661 bayes_pls_golite062009
  • oxidoreductase activity
    		•  3.07409531087588 bayes_pls_golite062009
  • alcohol dehydrogenase activity, metal ion-independent
    		•  3.05722501802075 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  2.83823088483915 bayes_pls_golite062009
  • catalytic activity
    		•  2.37357608468991 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  2.10085302216488 bayes_pls_golite062009
  • binding
    		•  1.15096180564234 bayes_pls_golite062009
  • 3-chloroallyl aldehyde dehydrogenase activity
    		•  0.831155115586418 bayes_pls_golite062009
  • cation binding
    		•  0.319000821544479 bayes_pls_golite062009
  • metal ion binding
    		•  0.319000821544479 bayes_pls_golite062009
  • ion binding
    		•  0.313606245452103 bayes_pls_golite062009
  • protein binding
    		•  0.295023706645045 bayes_pls_golite062009
  • transition metal ion binding
    		•  0.259889634539407 bayes_pls_golite062009
  • hydroxyacid-oxoacid transhydrogenase activity
    		•  0.146499147589879 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  0.0904828025133766 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle