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Protein Overview: gi|24350798, gi|...

General Information:
Name(s) found: gi|24375839 [NCBI NR]
gi|24350798 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24375839|ref|NP_719882.1| anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350798|gb|AAN57326.1|AE015869_2 anaerobic dimethyl sulfoxide reductase, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 862 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: dimethyl sulfoxide reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRRAFLKMS ASCAAAATVV GCGSDKNPVL KPEVSPEQVP EISKLSACIG NCFQTCPLRV  60
   61 YSRNGIITRI ESESGGDIKF VDNWSVDGAH HEIRPCLKGR AQKQKAYSAD RVKYPMKRVG 120
  121 PRGSGQYVRI SWDEAINTVA QELSTKITTY GAQSIYLPVA TGDYDYQVDG MYAAMMFLHE 180
  181 ITKKKIPLYI PEMDFTMELD ASGYLMYHDS YSAAQMKDAV KSTFGWDDLW GTGNTLLDVK 240
  241 NGTDLMICFG YNPMESRMGG AGSAYDYTNL KRQFGFKTIY IEPRYTDTMV VCDDQWVPIR 300
  301 PGTDAALAEA IAYVWIAEMD EAPLDMAFLQ SKVYGYGAEA AFDHYPELPL AKSYKGHILG 360
  361 LDDGQAKTPE WAAAITGIPV DTIRALASEI AAAKTPFFIQ GWGIQRAQNG ENAARSLFML 420
  421 PILLGKVGDK GTNFCSVPGA KTYAKPIVAG MEADSVGNSV GSAVINGTEF TIPGYKWLEG 480
  481 VQRPLNSRDD GLRHMLGEEQ KKDHDNILEL KNPIKFIFGN ACGTTLNQTA DINHTLDILN 540
  541 NAPEAQDLFI LAIDHMFSPS AKMADIILPC ITNLENSDIV TNKLDHDSGM MVYSYVFERA 600
  601 IEPMYEAKST WEICRLLAAR MGVEHSYARL KTQDEWVKWS FEHYAKKVPN LYNPEDTYES 660
  661 VLGRSPVRRI ASENPLFKGL REFKYGGVTL NTPSKKIEAY SLTLLNRTRF EKFEETETSF 720
  721 IGKYIPATEG AEDNEFAAEY PFQLISWHHK GRVHSTHANY PWLKEANDQV AWINPLDAQR 780
  781 YGVVNGKKMT LTNPRDAKMV ITAKVTTRVM PGVIAMGHGA WHQPDANGVD HGGSVNVLVS 840
  841 RKASPTARGI PANTARIRIV QA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..862] PSI-BLAST 147.0 OXIDIZED DMSO REDUCTASE FROM RHODOBACTER CAPSULATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • trimethylamine-N-oxide reductase activity
    		•  8.75612712598998 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  6.81363258746891 bayes_pls_golite062009
  • formate dehydrogenase activity
    		•  6.68295624624715 bayes_pls_golite062009
  • metal cluster binding
    		•  5.7442724322527 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  5.7442724322527 bayes_pls_golite062009
  • molybdenum ion binding
    		•  3.31971125919934 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor
    		•  2.54554723799271 bayes_pls_golite062009
  • nitrate reductase activity
    		•  2.20600951698793 bayes_pls_golite062009
  • catalytic activity
    		•  1.93875927205186 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.8662488889516 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  1.84836110501265 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.29705810885029 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.27093915206504 bayes_pls_golite062009
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  1.12492792673137 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  0.968773059107375 bayes_pls_golite062009
  • lyase activity
    		•  0.603656450860878 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.134493772161849 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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