YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24375796, gi|...

General Information:
Name(s) found: gi|24375796 [NCBI NR]
gi|24350744 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|24375796|ref|NP_719839.1| uroporphyrinogen-III synthase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350744|gb|AAN57283.1|AE015863_12 uroporphyrinogen-III synthase [Shewanella oneidensis MR-1] [NCBI NR]
  • uroporphyrinogen-III synthase [Shewanella oneidensis MR-1]gi|24350744|gb|AAN57283.1| uroporphyrinogen-III synthase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • uroporphyrinogen-III synthase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: porphyrin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: uroporphyrinogen-III synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLLTRPEG RNQSMVDALN ERGIEHCVTP LLCVEATPAL PPETSHPLAN VDMVVCISAN  60
   61 AVSFADDTFK ANDANVKGWP KVPYFAVGHA TWEALQQIDI DALEAPDDCQ QTEGLLTLPT 120
  121 LQHIQGKKIT IIRGVGGREA LAEQLTSRGA QVRYWEVYQR ACPPLDGTII TQQWIDLGID 180
  181 TVVVTSGEVL DNLINLVPKE LFAWLRSCHI IVPSNRVEAQ AHAFGITQVT NANAANSKAV 240
  241 LNALKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 46.0 Uroporphyrinogen III synthase (U3S, HemD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • uroporphyrinogen-III synthase activity
    		•  3.19339392327514 bayes_pls_golite062009
  • catalytic activity
    		•  1.50868196926865 bayes_pls_golite062009
  • hydro-lyase activity
    		•  0.850411184249311 bayes_pls_golite062009
  • lyase activity
    		•  0.0536528882085157 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle