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Protein Overview: gi|24350697, gi|...

General Information:
Name(s) found: gi|24375753 [NCBI NR]
gi|24373717 [NCBI NR]
gi|24372552 [NCBI NR]
gi|24350697 [NCBI NR]
gi|24348086 [NCBI NR]
gi|24346567 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|24375753|ref|NP_719796.1| ISSod2, transposase OrfB [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24373717|ref|NP_717760.1| ISSod2, transposase OrfB [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24372552|ref|NP_716594.1| ISSod2, transposase OrfB [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350697|gb|AAN57240.1|AE015860_2 ISSod2, transposase OrfB [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348086|gb|AAN55204.1|AE015658_10 ISSod2, transposase OrfB [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346567|gb|AAN54039.1|AE015541_9 ISSod2, transposase OrfB [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 271 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transposition, DNA-mediated [ISSLink to PubMed article]
    Molecular Function: transposase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLSQRKAM AQHAVANRKI SIRLACAAFC ISETCYRYRR VNDDENAEIA EFLVELTEKE  60
   61 SDWGFGQCFN YLRNVKGFAW NHKRVYRIYC ELALNLRIKP RRRLKRNAPE PLKEPTKANQ 120
  121 VWSIDFMHDQ LSDGRSYRLF NVIDDFKREG LAIEAGFSLP TMRVIRTLNQ LLEGRTKPIA 180
  181 IRCDNGPEFI SHEFTEWAKK HEIRIDYIQP GKPQQNAYIE RHNKTIRYSW VSKHLFDTLE 240
  241 EVQDYATKWL WFYNHERPHK ANGGKPPLMV A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] MSA 1.627996 View MSA. No confident structure predictions are available.
    2 View Details [63..271] FFAS03 3.7 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.53924789709051 bayes_pls_golite062009
  • nuclease activity
    		•  1.33447740033502 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.23347009562032 bayes_pls_golite062009
  • hydrolase activity
    		•  1.22075366957547 bayes_pls_golite062009
  • exonuclease activity
    		•  1.20458535230258 bayes_pls_golite062009
  • transposase activity
    		•  0.965908684749648 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.330313608754008 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.26323966197813 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.248165509716873 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle