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Protein Overview: gi|24375749, gi|...

General Information:
Name(s) found: gi|24375749 [NCBI NR]
gi|24350692 [NCBI NR]
Description(s) found:
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  • gi|24375749|ref|NP_719792.1| type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350692|gb|AAN57236.1|AE015859_5 type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • type I restriction-modification system, M subunit [Shewanella oneidensis MR-1]gi|24350692|gb|AAN57236.1| type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • type I restriction-modification system, M subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 537 amino acids

    Gene Ontology:
    Cellular Component: Type I site-specific deoxyribonuclease complex [ISSLink to PubMed article]
    Biological Process: DNA methylation [ISSLink to PubMed article]
    DNA modification [ISSLink to PubMed article]
    Molecular Function: site-specific DNA-methyltransferase (adenine-specific) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITSSNSDI VQKLWNLCDV LRDDGINYSD YVTELVLLLF IKMVHENTEA GLLNKHTLPT  60
   61 GCRWTDLNDK DGLNLLDDYK RILLTLSTGK DSEGNTLHAD PLILAIYADA QTRLREPRHL 120
  121 KQLIKSLDSI DWFSAQKDGL GDLYEGLLEK NANETKSGAG QYFTPRALID SMVRVINPQA 180
  181 GEVIQDPAAG TAGFLIAAHE FIKNADNYDD LTLKEIEHLR NKAFIGVELV PSTRRLALMN 240
  241 CLLHGMEGDD EGVVHLGNSL GQVGMSLPKA DIILANPPFG TSKGGDASIT RDDLTYPTSN 300
  301 KQLAFLQHIY RNLKPGGRAA VVLPDNVLFE AGVGTDVRRD LMYKCNLHTI LRLPTGIFYA 360
  361 AGVKTNVLFF TKGSEADKLQ EENCTTNTWV YDLRTNMPNF GKRTPFGEQH LTPFEAVYDP 420
  421 SSHSREGGNP DLSARKEGEW SFNAEAVEIE TTEVNQGIDE RLAKSRWRVF SREFIRDTKG 480
  481 DSLDISWLKD SNSVDAADLG TPEELAGEAM TELKGALADL EALMKSLGAE LKTEVKG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..537] PSI-BLAST 91.39794 Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-methyltransferase activity
    		•  7.61853880993981 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  7.11249059771057 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  4.4632173842967 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.15445027778357 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.07153733729662 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  3.39676833658685 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  3.33061049943022 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  2.22830304942698 bayes_pls_golite062009
  • transferase activity
    		•  2.22303238506686 bayes_pls_golite062009
  • protein-arginine N-methyltransferase activity
    		•  1.89831891552024 bayes_pls_golite062009
  • arginine N-methyltransferase activity
    		•  1.89831891552024 bayes_pls_golite062009
  • histone-arginine N-methyltransferase activity
    		•  1.30685781453463 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • protein-arginine omega-N symmetric methyltransferase activity
    		•  1.00318794562816 bayes_pls_golite062009
  • protein-arginine omega-N monomethyltransferase activity
    		•  0.950437293690352 bayes_pls_golite062009
  • DNA (cytosine-5-)-methyltransferase activity
    		•  0.937171599492037 bayes_pls_golite062009
  • binding
    		•  0.907448038004683 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  0.817509452491588 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.517021612434243 bayes_pls_golite062009
  • DNA binding
    		•  0.508133107367239 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.443691572120283 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  0.421039991390153 bayes_pls_golite062009
  • protein-arginine omega-N asymmetric methyltransferase activity
    		•  0.40782425952463 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  0.230719796976667 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle