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Protein Overview: gi|24350674, gi|...

General Information:
Name(s) found: gi|24375733 [NCBI NR]
gi|24350674 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375733|ref|NP_719776.1| DNA/pantothenate metabolism flavoprotein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350674|gb|AAN57220.1|AE015858_1 DNA/pantothenate metabolism flavoprotein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA replication [ISSLink to PubMed article]
    pantothenate metabolic process [ISSLink to PubMed article]
    coenzyme A biosynthetic process [ISSLink to PubMed article]
    Molecular Function: phosphopantothenoylcysteine decarboxylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSLITKNV LLGIGGGIAA YKSADLVRRL KERGFDVRVV MSQSAMEFIT PLTLQALSGH  60
   61 PVSSSLLDPA AEAAMGHIEL ARWADLVIIA PATANLLARI NAGMADELIT TTCLATEAPI 120
  121 ALCPAMNQQM YRNLATQANL ASLQSRGYTL WGPASGSQAC GEVGPGRMLE PLEIAELASR 180
  181 FFATKDVYAE QESQPLAGQS VLITAGPTRE AIDPVRYISN HSSGKMGFAL AKAAADMGAA 240
  241 VTLVAGPVNL ATPEGVTRID VESAQNMLDA VMDNVDKKDI FIGCAAVADY RVNDIAACKI 300
  301 KKSAEEMQLA LVRNPDILAT VASLANRPFV VGFAAETHDV ETYARDKLKR KNLNMIAAND 360
  361 VSVAGQGFNA DANALRVFWP QGSQDLPATD KLTLARQLLS LIVKEKTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..198] PSI-BLAST 50.30103 crystal structure of human phosphopantothenoylcysteine decarboxylase
    2 View Details [199..408] PSI-BLAST 69.0 Phosphopantothenoylcysteine synthetase from E. coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphopantothenoylcysteine decarboxylase activity
    		•  3.86093811191169 bayes_pls_golite062009
  • phosphopantothenate--cysteine ligase activity
    		•  2.64345867885176 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.79168084682693 bayes_pls_golite062009
  • catalytic activity
    		•  1.51672397362026 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.03827559540394 bayes_pls_golite062009
  • binding
    		•  0.299141917010304 bayes_pls_golite062009
    2
    Term Confidence Notes
  • phosphopantothenate--cysteine ligase activity
    		•  5.69075768451173 bayes_pls_golite062009
  • phosphopantothenoylcysteine decarboxylase activity
    		•  5.47152792211468 bayes_pls_golite062009
  • catalytic activity
    		•  1.32370671504792 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.28899846789805 bayes_pls_golite062009
  • ligase activity
    		•  0.615843055306698 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.53776941010038 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.529888965129474 bayes_pls_golite062009
  • binding
    		•  0.396515598353762 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.133284065682966 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.56

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle