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Protein Overview: gi|24375411, gi|...

General Information:
Name(s) found: gi|24375411 [NCBI NR]
gi|24350249 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24375411|ref|NP_719454.1| thiamine biosynthesis protein ThiH [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350249|gb|AAN56898.1|AE015824_9 thiH protein, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: thiamin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHEHHSIT LSDYNPNVNF IDDKAIWQTI EDASDPSREQ VLAILDKARQ CEGLSISETA  60
   61 LLLQNQDKTL DEMLFSVARE IKNTIYGNRI VMFAPLYVSN HCANSCSYCG FNADNHELKR 120
  121 KTLKQDEIRQ EVAILEEMGH KRILAVYGEH PRNNVQAIVE SIQTMYSVKQ GKGGEIRRIN 180
  181 VNCAPMSVED FKQLKTAAIG TYQCFQETYH QDTYSQVHLK GKKTDFLYRL YAMHRAMEAG 240
  241 IDDVGIGALF GLYDHRFELL AMLTHVQQLE KDCGVGPHTI SFPRIEPAHG SAISEKPPYE 300
  301 VDDDCFKRIV AITRLAVPYT GLIMSTRESA ALRKELLELG VSQISAGSRT APGGYQDSKQ 360
  361 NQHDAEQFSL GDHREMDEII YELVTDSDAI PSFCTGCYRK GRTGDHFMGL AKQQFIGKFC 420
  421 QPNALITFKE YLNDYASEKT REAGNALIER ELAKMSPSRA RNVRGCLQKT DAGERDIYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 13.30103 2.1 Angstrom X-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale SB4, with Michaelis analog (L-alpha-lysine external aldimine form of pyridoxal-5'-phosphate).
    2 View Details [66..479] PSI-BLAST 39.39794 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • biotin synthase activity
    		•  2.91919723818354 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  2.77364380055213 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  1.98245715445185 bayes_pls_golite062009
  • catalytic activity
    		•  1.85375915825216 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  1.02075980126493 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle