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Protein Overview: GLYA_SHEON

General Information:
Name(s) found: GLYA_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Serine hydroxymethyltransferase OS=Shewanella oneidensis (strain MR-1) GN=glyA PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 417 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: glycine biosynthetic process [ISSLink to PubMed article]
    one-carbon metabolic process [ISSLink to PubMed article]
    Molecular Function: glycine hydroxymethyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKDMNIAD YDPELFNAIQ NETLRQEEHI ELIASENYTS PRVMQAQGSQ LTNKYAEGYP  60
   61 GKRYYGGCEY VDVVETLAIE RAKQLFGATY ANVQPHSGSQ ANSAVYMALL KPGDTVLGMN 120
  121 LAHGGHLTHG SPVNFSGRLY NIIPYGIDES GKIDYDEMER LAVEHKPKMM IGGFSAYSGI 180
  181 VDWARMREIA DKIGAYLFVD MAHVAGLIAA GVYPNPVPHA HVVTSTTHKT LAGPRGGIIL 240
  241 SAADDEELYK KLNSAVFPGG QGGPLMHVIA GKAVAFKEAL EPEFKTYQQQ VVNNAKAMVE 300
  301 VFLERGYKIV SGGTSNHLML VDLIGRDLTG KEADAALGSA NITVNKNSVP NDPRSPFVTS 360
  361 GVRIGTPAIT RRGFKEAEAK QLTGWICDIL DDAHNPAVIE RVKGQVLALC ARFPVYG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..417] PSI-BLAST 94.0 Serine hydroxymethyltransferase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  3.359406422625 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  3.2128372762799 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  3.2128372762799 bayes_pls_golite062009
  • transferase activity
    		•  2.59075614411581 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  1.19150094103499 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07873942461292 bayes_pls_golite062009
  • O-phospho-L-serine:2-oxoglutarate aminotransferase activity
    		•  0.994935084630764 bayes_pls_golite062009
  • DNA binding
    		•  0.886628214497634 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.814403324199462 bayes_pls_golite062009
  • structural molecule activity
    		•  0.754675308623467 bayes_pls_golite062009
  • methyltransferase activity
    		•  0.681623261233707 bayes_pls_golite062009
  • vitamin binding
    		•  0.66463470119531 bayes_pls_golite062009
  • binding
    		•  0.661198018681765 bayes_pls_golite062009
  • transcription factor activity
    		•  0.615294010373048 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  0.60304280865376 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
    		•  0.54326874956263 bayes_pls_golite062009
  • L-allo-threonine aldolase activity
    		•  0.500744432308415 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  0.271623203801431 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle