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Protein Overview: gi|24349453, gi|...

General Information:
Name(s) found: gi|24374781 [NCBI NR]
gi|24349453 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374781|ref|NP_718824.1| polysaccharide biosynthesis protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349453|gb|AAN56268.1|AE015764_3 polysaccharide biosynthesis protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: polysaccharide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYGRQDIN QADVDAVIEV LNSDYLTQGP KVPAFESAVA SYCSARYGVA VNSATSALHI  60
   61 ACLALGVGPN DIVWTSPITF VASANCALYC GAEIDFVDVD PLTGNLCPHA LAMKLEQAAR 120
  121 IGKLPKVVIP VHLCGHSCDM AAIAALAEQY SFHIIEDASH GIGGSYHGYP LGSCQYSDIT 180
  181 VFSFHPVKII TSAEGGMAMT NSSELAEKMA LYRSHGITKA PDKMLRPDEG DWYYEQHALG 240
  241 FNYRMTELQA ALGLSQISRL NAFVLKRNEL AAIYRKELIG LPFCWVEPLS NTQSARHLQI 300
  301 IRLNDASRRK QLFNDMRAAN VQVHVHYFPV HLQPYYLKQG FKEGDFPQAE AFYQQILTLP 360
  361 LYPLMTDKEQ ACVINTLLAV L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..381] PSI-BLAST 75.0 Aminotransferase ArnB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • transferase activity
    		•  1.88724762473867 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.04120152111819 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.931306711980082 bayes_pls_golite062009
  • DNA binding
    		•  0.848720370176023 bayes_pls_golite062009
  • transcription factor activity
    		•  0.472043252989895 bayes_pls_golite062009
  • binding
    		•  0.450641761940864 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle