YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349453, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	381 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349453, gi|....

Description	E-value	Query Range	Subject Range
gi\|78521400, gi\|... - gi\|78701044\|ref\|ZP_00865497.1\| putative FlmB [Alkalilimnicola ehrlichei MLHE-1], gi\|78521400\|gb\|EAP3...	313.0	[0..1]	[381..1]
gi\|20560141 - gi\|20560141\|gb\|AAM27873.1\|AF498420_7 ORF_7; similar to DegT/DnrJ/EryC1/StrS family [Pseudomonas aeru...	312.0	[0..1]	[381..1]
gi\|78221678, gi\|... - gi\|78221678\|ref\|YP_383425.1\| DegT/DnrJ/EryC1/StrS aminotransferase [Geobacter metallireducens GS-15]...	306.0	[0..2]	[381..6]
gi\|114046892, gi... - gi\|78690287\|ref\|ZP_00854936.1\| putative FlmB [Shewanella sp. MR-7], gi\|78510316\|gb\|EAP23689.1\| putat...	304.0	[0..1]	[381..1]
gi\|117612083, gi... - gi\|78686572\|ref\|ZP_00851338.1\| polysaccharide biosynthesis protein [Shewanella sp. ANA-3], gi\|785057...	302.0	[0..1]	[381..1]
gi\|71065220, gi\|... - gi\|71065220\|ref\|YP_263947.1\| putative DegT/DnrJ/EryC1/StrS aminotransferase [Psychrobacter arcticus ...	299.0	[0..1]	[381..1]
gi\|77381749, gi\|... - gi\|77457746\|ref\|YP_347251.1\| DegT/DnrJ/EryC1/StrS aminotransferase [Pseudomonas fluorescens Pf0-1], ...	299.0	[0..1]	[379..1]
gi\|5616171 - gi\|5616171\|gb\|AAD45657.1\|AF126256_2 FlmB [Aeromonas punctata]	299.0	[0..1]	[381..1]
gi\|46914309, gi\|... - gi\|54309870\|ref\|YP_130890.1\| putative FlmB [Photobacterium profundum SS9], gi\|46914309\|emb\|CAG21088....	298.0	[0..1]	[381..5]

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Predicted Domain #1

Region A:
Residues: [1-381]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYGRQDIN QADVDAVIEV LNSDYLTQGP KVPAFESAVA SYCSARYGVA VNSATSALHI  60
   61 ACLALGVGPN DIVWTSPITF VASANCALYC GAEIDFVDVD PLTGNLCPHA LAMKLEQAAR 120
  121 IGKLPKVVIP VHLCGHSCDM AAIAALAEQY SFHIIEDASH GIGGSYHGYP LGSCQYSDIT 180
  181 VFSFHPVKII TSAEGGMAMT NSSELAEKMA LYRSHGITKA PDKMLRPDEG DWYYEQHALG 240
  241 FNYRMTELQA ALGLSQISRL NAFVLKRNEL AAIYRKELIG LPFCWVEPLS NTQSARHLQI 300
  301 IRLNDASRRK QLFNDMRAAN VQVHVHYFPV HLQPYYLKQG FKEGDFPQAE AFYQQILTLP 360
  361 LYPLMTDKEQ ACVINTLLAV L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1mdoA
Description:	Aminotransferase ArnB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.29878871754893	bayes_pls_golite062009
transferase activity	1.88724762473867	bayes_pls_golite062009
transcription regulator activity	1.04120152111819	bayes_pls_golite062009
nucleic acid binding	0.931306711980082	bayes_pls_golite062009
DNA binding	0.848720370176023	bayes_pls_golite062009
transcription factor activity	0.472043252989895	bayes_pls_golite062009
binding	0.450641761940864	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: