YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24349353, gi|...

General Information:
Name(s) found: gi|24374701 [NCBI NR]
gi|24349353 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24374701|ref|NP_718744.1| dTDP-glucose 4,6 dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349353|gb|AAN56188.1|AE015756_9 dTDP-glucose 4,6-dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lipopolysaccharide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: dTDP-glucose 4,6-dehydratase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVTGGAG FIGSAVVRHI IGNTQDCVVN VDKLTYAGNL ESLTSVADSP RYTFEKVDIC  60
   61 DRTELERVFS LHQPDAVMHL AAESHVDRSI TGSADFIQTN IVGTYTLLEA ARHYWMQLNT 120
  121 ERKSAFRFHH ISTDEVYGDL PHPDEINVEC SMLNDECKDH STLNIQHSTL PLFTETTPYT 180
  181 PSSPYSASKA SSDHLVRAWL RTYGFPTIVT NCSNNYGPYH FPEKLIPLVI LNALEGKPLP 240
  241 IYGKGDQIRD WLYVEDHARA LFKVVTEGKV GETYNIGGHN EKRNLEVVQT ICSILDSLVP 300
  301 KNTPYAEQIA YVADRPGHDR RYAIDATKMS AELDWQPQET FETGLRKTVE WYLANQEWCQ 360
  361 HVQDGTYQRE RLGEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 93.39794 dTDP-glucose 4,6-dehydratase (RmlB)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.868888700854563 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009
  • DNA binding
    		•  0.790382977752475 bayes_pls_golite062009
  • binding
    		•  0.784517759335365 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.613310508772122 bayes_pls_golite062009
  • transcription factor activity
    		•  0.11102650759187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle