YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349353, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349353, gi|....

Description	E-value	Query Range	Subject Range
gi\|77810847, gi\|... - gi\|77814102\|ref\|ZP_00813368.1\| dTDP-glucose 4,6-dehydratase [Shewanella putrefaciens CN-32], gi\|7781...	358.0	[0..1]	[373..1]
gi\|91794014, gi\|... - gi\|91794014\|ref\|YP_563665.1\| dTDP-glucose 4,6 dehydratase [Shewanella denitrificans OS217], gi\|91716...	355.0	[0..1]	[373..1]
gi\|113969661, gi... - gi\|82495275\|ref\|ZP_00880852.1\| dTDP-glucose 4,6-dehydratase [Shewanella sp. MR-4], gi\|82406778\|gb\|EA...	354.0	[0..1]	[373..1]
gi\|78687114, gi\|... - gi\|78687114\|ref\|ZP_00851870.1\| dTDP-glucose 4,6-dehydratase [Shewanella sp. ANA-3], gi\|78505114\|gb\|E...	354.0	[0..1]	[373..1]
gi\|120598285, gi... - gi\|82742240\|ref\|ZP_00904939.1\| dTDP-glucose 4,6-dehydratase [Shewanella sp. W3-18-1], gi\|82720382\|gb...	353.0	[0..1]	[373..1]
gi\|71044435 - gi\|71044435\|gb\|AAZ20755.1\| dTDP-D-glucose 4,6-dehydratase [Escherichia coli]	353.0	[0..1]	[373..1]
gi\|160861661, gi... - gi\|160876139\|ref\|YP_001555455.1\| dTDP-glucose 4,6 dehydratase [Shewanella baltica OS195], gi\|1608616...	351.0	[0..1]	[373..1]
gi\|194537190, gi... - gi\|75818183\|ref\|ZP_00748386.1\| COG1088: dTDP-D-glucose 4,6-dehydratase [Vibrio cholerae V51], gi\|254... tr\|A0A085T889\|A0... - dTDP-glucose 4,6-dehydratase OS=Vibrio cholerae GN=rfbB PE=3 SV=1	351.0	[0..1]	[373..1]
gi\|126637627, gi... - gi\|78367804\|ref\|ZP_00838066.1\| dTDP-glucose 4,6-dehydratase [Shewanella sp. PV-4], gi\|78360154\|gb\|EA...	351.0	[0..1]	[373..1]

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Predicted Domain #1

Region A:
Residues: [1-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVTGGAG FIGSAVVRHI IGNTQDCVVN VDKLTYAGNL ESLTSVADSP RYTFEKVDIC  60
   61 DRTELERVFS LHQPDAVMHL AAESHVDRSI TGSADFIQTN IVGTYTLLEA ARHYWMQLNT 120
  121 ERKSAFRFHH ISTDEVYGDL PHPDEINVEC SMLNDECKDH STLNIQHSTL PLFTETTPYT 180
  181 PSSPYSASKA SSDHLVRAWL RTYGFPTIVT NCSNNYGPYH FPEKLIPLVI LNALEGKPLP 240
  241 IYGKGDQIRD WLYVEDHARA LFKVVTEGKV GETYNIGGHN EKRNLEVVQT ICSILDSLVP 300
  301 KNTPYAEQIA YVADRPGHDR RYAIDATKMS AELDWQPQET FETGLRKTVE WYLANQEWCQ 360
  361 HVQDGTYQRE RLGEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.39794
Match:	1g1aA
Description:	dTDP-glucose 4,6-dehydratase (RmlB)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
UDP-glucose 4-epimerase activity	2.13934644118967	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.03956654822048	bayes_pls_golite062009
nucleic acid binding	0.868888700854563	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.82673050487418	bayes_pls_golite062009
DNA binding	0.790382977752475	bayes_pls_golite062009
binding	0.784517759335365	bayes_pls_golite062009
transcription regulator activity	0.613310508772122	bayes_pls_golite062009
transcription factor activity	0.11102650759187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: