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Protein Overview: TRPA_SHEON

General Information:
Name(s) found: TRPA_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24374549|ref|NP_718592.1| tryptophan synthase subunit alpha [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349141|gb|AAN56036.1|AE015738_11 tryptophan synthase, alpha subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • Tryptophan synthase alpha chain OS=Shewanella oneidensis (strain MR-1) GN=trpA PE=3 SV=1 [Swiss-Prot]
  • tryptophan synthase, alpha subunit [Shewanella oneidensis MR-1]gi|24349141|gb|AAN56036.1| tryptophan synthase, alpha subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • tryptophan synthase, alpha subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 278 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tryptophan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: tryptophan synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSISNQTIP HQASRYQAAF SRLKAEGRGA FVPFVTLGDP SPELSLKIID TLVQNGADAL  60
   61 ELGFPFSDPL ADGPVIQGAN LRALAAGTTP TACFELLAKI RAKYPELPIG LLLYANLVFA 120
  121 NGIDAFYAKA QQAGVDSVLI ADVPVEEAAP FIQAAKAHGI APIFIAPPNA DSDTLAKVSQ 180
  181 SGEGYTYLLS RAGVTGADTK AGTPVEEILA KLQEFNAPPP LLGFGIAEPA QVSAAIKAGA 240
  241 AGAISGSAVV KIIETHQQDE VKLLAALGEF TRTMKAAT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..278] PSI-BLAST 64.69897 Trp synthase alpha-subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.15663465352598 bayes_pls_golite062009
  • indole-3-glycerol-phosphate synthase activity
    		•  3.12120866545322 bayes_pls_golite062009
  • catalytic activity
    		•  2.81275055404078 bayes_pls_golite062009
  • phosphoribosylanthranilate isomerase activity
    		•  2.655130814615 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  2.44001937916931 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.80978905789979 bayes_pls_golite062009
  • lyase activity
    		•  0.9228652996943 bayes_pls_golite062009
  • imidazoleglycerol-phosphate synthase activity
    		•  0.82314869965119 bayes_pls_golite062009
  • 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
    		•  0.302746738903759 bayes_pls_golite062009
  • isomerase activity
    		•  0.14149405165663 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle