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Protein Overview: RIBA_SHEON

General Information:
Name(s) found: RIBA_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24374360|ref|NP_718403.1| GTP cyclohydrolase II [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348917|gb|AAN55847.1|AE015721_10 GTP cyclohydrolase II [Shewanella oneidensis MR-1] [NCBI NR]
  • GTP cyclohydrolase-2 OS=Shewanella oneidensis (strain MR-1) GN=ribA PE=3 SV=1 [Swiss-Prot]
  • GTP cyclohydrolase II [Shewanella oneidensis MR-1]gi|24348917|gb|AAN55847.1| GTP cyclohydrolase II [Shewanella oneidensis MR-1]gi|31563134|sp|Q8EDD1|GCH2_SHEON GTP cyclohydrolase II [nrdb_11152004_Chlamydomonas]
  • GTP cyclohydrolase II [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 203 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: riboflavin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: GTP cyclohydrolase II activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKYVATSK LPTPWGVFAM HGFEDTETGK EHVALTFGSL SSDEPVLGRI HSECLTGDAL  60
   61 FSLRCDCGFQ LQTAMQNIAE TGSGFILYLR QEGRGIGLLN KIRAYELQDK GANTVEANEQ 120
  121 LGFPADMRKY DMIQPMLEKI GVKHVRLMTN NPRKVKAMKE IGIEVVERVP LQVGKNRYNE 180
  181 AYLKTKSTEL GHMMSEYHFT DEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 82.0 Crystal Structure of E. coli GTP cyclohydrolase II in complex with GTP analogue, GMPcPP, and Zinc

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • GTP cyclohydrolase II activity
    		•  5.52815352448731 bayes_pls_golite062009
  • GTP cyclohydrolase activity
    		•  4.68330806755482 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  4.17350205350813 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  3.79278058687802 bayes_pls_golite062009
  • catalytic activity
    		•  1.77808031039581 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.336476611336042 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle