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Protein Overview: gi|24348909, gi|...

General Information:
Name(s) found: gi|24374352 [NCBI NR]
gi|24348909 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374352|ref|NP_718395.1| sensor histidine kinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348909|gb|AAN55839.1|AE015721_2 sensor histidine kinase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 560 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: two-component signal transduction system (phosphorelay) [ISSLink to PubMed article]
    Molecular Function: two-component sensor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLILLLTQQ MSLYLVIVYL VSKTPLFKLF AETSPRLPHK IFIYLVFSSF CIMATYFGEQ  60
   61 TSGAIANTRA MGAVLGGLLG GPVTGFLVGL TGGLHRYSMG GFTDLACAIS TTLEGLSAGM 120
  121 ISFYLRRAGK SELIYNPLLV CLVTFYAEIM QMSLILLIAC PFDAAWELVR QIAPPMLLVN 180
  181 SIGAALFMSM IRDQKTMFDK LSSSFSTKAL KIAERSVGLL SKGFNEESSG KVAQIVIEET 240
  241 NVGAVAITDR EKLLAFIGIG ADHHIPGTPI SSQITLEAIN QNKVMFADGV EIPYSCSISS 300
  301 QCKLGSSLVI PLRSDTEVIG TIKLYEPKNK LFLNINRTLG EGIARLLSNQ ILYGRFEQQQ 360
  361 NLLTQAELKL LQAQVNPHFL FNALNTISAI IKRDPDMSKQ LLQQLSQFLR INLKRTTGLV 420
  421 TLGDELDHIA SYLTIEKARF INKLQVNIAI PESLYHCKVP AFTLQPIIEN AVKHGTSHMI 480
  481 DQGQIKVTGR LDEHVLALEV IDNAGLYQPS TDSEGLGMNL VHKRIQNLFG EQYGLQVECE 540
  541 PDEYTKVIIR LPIEKTETST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] Pfam 35.443697 No description for PF07694.3 was found. No confident structure predictions are available.
    2 View Details [135..341] FFAS03 2.92 Crystal structure of an hypothetical protein
    3 View Details [342..560] PSI-BLAST 38.39794 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.95758588715202 bayes_pls_golite062009
  • signal transducer activity
    		•  1.13344214754837 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.13344214754837 bayes_pls_golite062009
  • DNA binding
    		•  0.782169600399986 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.68885051853759 bayes_pls_golite062009
  • transcription factor activity
    		•  0.627985657557994 bayes_pls_golite062009
  • two-component response regulator activity
    		•  0.508776074549631 bayes_pls_golite062009
  • receptor activity
    		•  0.397102537009968 bayes_pls_golite062009
  • protein binding
    		•  0.337226924882729 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  0.195168640304713 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  0.0600535298662946 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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