YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24348909, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLILLLTQQ MSLYLVIVYL VSKTPLFKLF AETSPRLPHK IFIYLVFSSF CIMATYFGEQ  60
   61 TSGAIANTRA MGAVLGGLLG GPVTGFLVGL TGGLHRYSMG GFTDLACAIS TTLEGLSAGM 120
  121 ISFYLRRAGK SELIYNPLLV CLVTFYAEIM QMSLILLIAC PFDAAWELVR QIAPPMLLVN 180
  181 SIGAALFMSM IRDQKTMFDK LSSSFSTKAL KIAERSVGLL SKGFNEESSG KVAQIVIEET 240
  241 NVGAVAITDR EKLLAFIGIG ADHHIPGTPI SSQITLEAIN QNKVMFADGV EIPYSCSISS 300
  301 QCKLGSSLVI PLRSDTEVIG TIKLYEPKNK LFLNINRTLG EGIARLLSNQ ILYGRFEQQQ 360
  361 NLLTQAELKL LQAQVNPHFL FNALNTISAI IKRDPDMSKQ LLQQLSQFLR INLKRTTGLV 420
  421 TLGDELDHIA SYLTIEKARF INKLQVNIAI PESLYHCKVP AFTLQPIIEN AVKHGTSHMI 480
  481 DQGQIKVTGR LDEHVLALEV IDNAGLYQPS TDSEGLGMNL VHKRIQNLFG EQYGLQVECE 540
  541 PDEYTKVIIR LPIEKTETST

Type	Start	End	Confidence
Cytoplasmic	1	10	0.68
Transmembrane Helix	11	31	0.76
Non-Cytoplasmic	32	39	0.68
Transmembrane Helix	40	58	0.94
Cytoplasmic	59	69	0.69
Transmembrane Helix	70	94	0.85
Non-Cytoplasmic	95	101	0.71
Transmembrane Helix	102	125	0.84
Cytoplasmic	126	133	0.79
Transmembrane Helix	134	159	0.81
Non-Cytoplasmic	160	171	0.67
Transmembrane Helix	172	191	0.88
Cytoplasmic	192	560	0.77