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Protein Overview: gi|24374321, gi|...

General Information:
Name(s) found: gi|24374321 [NCBI NR]
gi|24348868 [NCBI NR]
Description(s) found:
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  • gi|24374321|ref|NP_718364.1| ribonuclease E [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348868|gb|AAN55808.1|AE015717_9 ribonuclease E [Shewanella oneidensis MR-1] [NCBI NR]
  • ribonuclease E [Shewanella oneidensis MR-1]gi|24348868|gb|AAN55808.1| ribonuclease E [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • ribonuclease E [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 1088 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [ISSLink to PubMed article]
    Molecular Function: ribonuclease E activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKSN IYKGKITRVE PSLEAAFVDY  60
   61 GAERHGFLPL KEIAREYFPK GYSFQGRPNI KEVVSEGQEV IVQIDKEERG NKGAALTTFI 120
  121 SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKEAMADLEV PAGMGLIVRT AGVGKESTEL 180
  181 KWDLKVLQHH WAAITEAAQT KGAPFLIHQE SNVIVRAIRD YLRRDVGEIL IDHPRIYEEA 240
  241 KQHIALVRPD FVERVKLYEA EVPLFTHYQI ESQIESAFQR EVRLPSGGSI VIDPTEALTS 300
  301 IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN 360
  361 RLRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HICPRCHGQG TIRSTESLAL 420
  421 SILRLMEEEA IKENTSQIEA IVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPHMMTP 480
  481 DYRVIRHRTD DEIDESSYKR IEQPEAKLYE PRKLERTAAP APALKGFTAP QKVEQDVAPV 540
  541 AKVEAAKPGL FSKLFSAIGS FFSSSDNAAT EKSAETKKSD SQATNANRRN RRNDTRRTRN 600
  601 NQDTEKAKEG SREPRARNAK KVADAPQAQE RPIREKDESA KRAKPEAKNR SQAPKEVIAD 660
  661 VQDEAPKQEV VRERRQRRNM RRKVRMDNTT DVVETSIQEE AILAEIVAIN ADAAVEAQPE 720
  721 AKAPRSRRQP RKEVAVANET TDTPATDAAD EAKPIDAIAD APIVESQADI QVDPKSEAQL 780
  781 ATTDEDNTDV DDKTKRESRD GQRRSRRSPR HLRAAGQRRR RDEDEQSTAA PAQFIPNDAL 840
  841 GEDQDYPAPM AIVETVNFAD QAVAETVAVE VEVKSVATQP TTVAHTADVT TSYEATFSES 900
  901 KAIDDATSAV AVEQLTDIKA DVVDTEIASE PVVNDNATQT VKVSNVIAES SVVIEPTVQT 960
  961 TVVAQTDVRT FDAKAEEVTQ ATEKAELKEV VKSVASAPMA KPAAIVKPQV KPVVAQASAV1020
 1021 QPSEAVVSKP KAASRFGAMV SSEMTKPTVE VRAQVEVPKG REYENTPASE AATKLKHSNS1080
 1081 AESDMARP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..515] PSI-BLAST 1000.0 Catalytic domain of E. coli RNase E
    2 View Details [516..828] FFAS03 1.87 30S subunit
    3 View Details [829..910] deduced N/A No confident structure predictions are available.
    4 View Details [911..1088] FFAS03 1.22 THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle