YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374321, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1088 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374321, gi|....

Description	E-value	Query Range	Subject Range
gi\|77958126 - gi\|77958126\|ref\|ZP_00822165.1\| COG1530: Ribonucleases G and E [Yersinia bercovieri ATCC 43970]	759.0	[0..4]	[486..1]
gi\|82408258, gi\|... - gi\|82408258\|pdb\|2C4R\|L Chain L, Catalytic Domain Of E. Coli Rnase E, gi\|82408201\|pdb\|2C0B\|L Chain L,...	756.0	[0..1]	[508..8]
gi\|67641114 - gi\|67641114\|ref\|ZP_00439899.1\| COG1530: Ribonucleases G and E [Burkholderia mallei GB8 horse 4]	741.0	[0..4]	[539..1]
gi\|33504214, gi\|... - gi\|33519869\|ref\|NP_878701.1\| ribonuclease E [Candidatus Blochmannia floridanus], gi\|33504214\|emb\|CAD...	738.0	[0..1]	[516..1]
gi\|83625512 - gi\|83625512\|ref\|ZP_00935743.1\| COG1530: Ribonucleases G and E [Burkholderia mallei JHU]	735.0	[0..4]	[569..1]
gi\|83620979 - gi\|83620979\|ref\|ZP_00931392.1\| COG1530: Ribonucleases G and E [Burkholderia mallei FMH]	733.0	[0..4]	[602..1]
gi\|71892189, gi\|... - gi\|71892189\|ref\|YP_277921.1\| ribonuclease E [Candidatus Blochmannia pennsylvanicus str. BPEN], gi\|71...	732.0	[0..1]	[515..1]
gi\|94676970, gi\|... - gi\|94676970\|ref\|YP_588881.1\| ribonuclease E [Baumannia cicadellinicola str. Hc (Homalodisca coagulat...	731.0	[0..1]	[505..2]
gi\|67670044, gi\|... - gi\|99908543\|ref\|ZP_01316219.1\| hypothetical protein Bpse1_03004384 [Burkholderia pseudomallei 1655],...	731.0	[0..4]	[539..1]

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Predicted Domain #1

Region A:
Residues: [1-515]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKSN IYKGKITRVE PSLEAAFVDY  60
   61 GAERHGFLPL KEIAREYFPK GYSFQGRPNI KEVVSEGQEV IVQIDKEERG NKGAALTTFI 120
  121 SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKEAMADLEV PAGMGLIVRT AGVGKESTEL 180
  181 KWDLKVLQHH WAAITEAAQT KGAPFLIHQE SNVIVRAIRD YLRRDVGEIL IDHPRIYEEA 240
  241 KQHIALVRPD FVERVKLYEA EVPLFTHYQI ESQIESAFQR EVRLPSGGSI VIDPTEALTS 300
  301 IDINSARATK GGDIEETALN TNLEAADEIA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN 360
  361 RLRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HICPRCHGQG TIRSTESLAL 420
  421 SILRLMEEEA IKENTSQIEA IVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPHMMTP 480
  481 DYRVIRHRTD DEIDESSYKR IEQPEAKLYE PRKLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2bx2L
Description:	Catalytic domain of E. coli RNase E
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [516-828]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTAAPAPALK GFTAPQKVEQ DVAPVAKVEA AKPGLFSKLF SAIGSFFSSS DNAATEKSAE  60
   61 TKKSDSQATN ANRRNRRNDT RRTRNNQDTE KAKEGSREPR ARNAKKVADA PQAQERPIRE 120
  121 KDESAKRAKP EAKNRSQAPK EVIADVQDEA PKQEVVRERR QRRNMRRKVR MDNTTDVVET 180
  181 SIQEEAILAE IVAINADAAV EAQPEAKAPR SRRQPRKEVA VANETTDTPA TDAADEAKPI 240
  241 DAIADAPIVE SQADIQVDPK SEAQLATTDE DNTDVDDKTK RESRDGQRRS RRSPRHLRAA 300
  301 GQRRRRDEDE QST

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.87
Match:	1dv4A
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [829-910]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPAQFIPND ALGEDQDYPA PMAIVETVNF ADQAVAETVA VEVEVKSVAT QPTTVAHTAD  60
   61 VTTSYEATFS ESKAIDDATS AV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [911-1088]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVEQLTDIKA DVVDTEIASE PVVNDNATQT VKVSNVIAES SVVIEPTVQT TVVAQTDVRT  60
   61 FDAKAEEVTQ ATEKAELKEV VKSVASAPMA KPAAIVKPQV KPVVAQASAV QPSEAVVSKP 120
  121 KAASRFGAMV SSEMTKPTVE VRAQVEVPKG REYENTPASE AATKLKHSNS AESDMARP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits