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Protein Overview: gi|24348706, gi|...

General Information:
Name(s) found: gi|24374193 [NCBI NR]
gi|24348706 [NCBI NR]
Description(s) found:
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  • gi|24374193|ref|NP_718236.1| prophage MuSo2, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348706|gb|AAN55680.1|AE015706_8 prophage MuSo2, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] [NCBI NR]
  • prophage MuSo2, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1]gi|24348706|gb|AAN55680.1| prophage MuSo2, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • prophage MuSo2, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: provirus [TASLink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    Molecular Function: transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGYDKNAD DIMKNADHIF EIKGIMRFPD RLKESIGDIS IRSFAKKCGL SEGVMRNYLA  60
   61 GKTYPSLDKL ALMAEVSNKP LDWLVAGTEH NFNELNEPGS KYVIGINLEE YALIPGYRVQ 120
  121 VSAGHGALNC DQQDPVRYLA FRRKWLKYRG FEEHELAIVW AKGDSMEPTI HSNDTLVVHL 180
  181 GRNSPADGHI YIFRNGDDLF VKRYQNAFGS WRLISDNPVY DKLDIPKHEQ HQFEVVGQVV 240
  241 HIAKDIGD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] PSI-BLAST 20.69897 LexA repressor, N-terminal DNA-binding domain; LexA C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.13370593570418 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.55694924162006 bayes_pls_golite062009
  • DNA binding
    		•  1.42504441648262 bayes_pls_golite062009
  • binding
    		•  1.26570271545147 bayes_pls_golite062009
  • transcription factor activity
    		•  0.911559854968835 bayes_pls_golite062009
  • protein binding
    		•  0.378066881516827 bayes_pls_golite062009
  • catalytic activity
    		•  0.0451617952658021 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.0123300332408647 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle