YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348706, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348706, gi|....

Description	E-value	Query Range	Subject Range
gi\|117609813, gi... - gi\|69258750\|ref\|ZP_00607262.1\| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Magnetococcus sp...	148.0	[0..25]	[246..30]
gi\|68544779, gi\|... - gi\|68544779\|ref\|ZP_00584383.1\| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Shewanella balti...	139.0	[0..25]	[241..1]
gi\|160875134, gi... - gi\|160875134\|ref\|YP_001554450.1\| putative phage repressor [Shewanella baltica OS195], gi\|160860656\|g...	139.0	[0..25]	[241..1]
gi\|170718159, gi... - gi\|46156134\|ref\|ZP_00133340.2\| COG2932: Predicted transcriptional regulator [Haemophilus somnus 2336...	139.0	[0..28]	[246..11]
gi\|33151354, gi\|... - gi\|33151354\|ref\|NP_872707.1\| transcription regulator [Haemophilus ducreyi 35000HP], gi\|33147574\|gb\|A...	139.0	[0..28]	[244..11]
gi\|91716618, gi\|... - gi\|91794616\|ref\|YP_564267.1\| transciptional regulator [Shewanella denitrificans OS217], gi\|91716618\|...	136.0	[0..30]	[241..4]
gi\|62527421 - gi\|62527421\|ref\|ZP_00388700.1\| COG2932: Predicted transcriptional regulator [Streptococcus thermophi...	135.0	[0..26]	[247..3]
gi\|55822854, gi\|... - gi\|55822854\|ref\|YP_141295.1\| transcriptional regulator [Streptococcus thermophilus CNRZ1066], gi\|557... gi\|55820932, gi\|... - gi\|55820932\|ref\|YP_139374.1\| transcriptional regulator [Streptococcus thermophilus LMG 18311], gi\|55... gi\|55738839, gi\|... - gb\|AAV62480.1\| transcriptional regulator [Streptococcus thermophilus CNRZ1066], gb\|AAV60559.1\| tran...	134.0	[0..26]	[247..1]

Back

Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGYDKNAD DIMKNADHIF EIKGIMRFPD RLKESIGDIS IRSFAKKCGL SEGVMRNYLA  60
   61 GKTYPSLDKL ALMAEVSNKP LDWLVAGTEH NFNELNEPGS KYVIGINLEE YALIPGYRVQ 120
  121 VSAGHGALNC DQQDPVRYLA FRRKWLKYRG FEEHELAIVW AKGDSMEPTI HSNDTLVVHL 180
  181 GRNSPADGHI YIFRNGDDLF VKRYQNAFGS WRLISDNPVY DKLDIPKHEQ HQFEVVGQVV 240
  241 HIAKDIGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1jhfA
Description:	LexA repressor, N-terminal DNA-binding domain; LexA C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.13370593570418	bayes_pls_golite062009
nucleic acid binding	1.55694924162006	bayes_pls_golite062009
DNA binding	1.42504441648262	bayes_pls_golite062009
binding	1.26570271545147	bayes_pls_golite062009
transcription factor activity	0.911559854968835	bayes_pls_golite062009
protein binding	0.378066881516827	bayes_pls_golite062009
catalytic activity	0.0451617952658021	bayes_pls_golite062009
transcription repressor activity	0.0123300332408647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: