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Protein Overview: gi|24374170, gi|...

General Information:
Name(s) found: gi|24374170 [NCBI NR]
gi|24348677 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374170|ref|NP_718213.1| stress response protein CspD [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348677|gb|AAN55657.1|AE015704_8 stress response protein CspD [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 68 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to stress [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    single-stranded DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGTVKWFN NAKGFGFICP DQGGEDVFAH YSTIEMEGYR TLKAGQPVQF EVEQGPKGMH  60
   61 ASAISPTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] PSI-BLAST 24.0 CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  2.67999218416128 bayes_pls_golite062009
  • DNA binding
    		•  2.0554473444871 bayes_pls_golite062009
  • binding
    		•  1.49502978097244 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.537716356194117 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0989196136046104 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle