YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374170, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374170, gi|....

Description	E-value	Query Range	Subject Range
gi\|34498661, gi\|... - gi\|34498661\|ref\|NP_902876.1\| cold shock transcription regulator protein [Chromobacterium violaceum A...	122.0	[0..1]	[67..44]
gi\|116651857, gi... - gi\|67661612\|ref\|ZP_00458904.1\| Cold-shock protein, DNA-binding [Burkholderia cenocepacia HI2424], gi...	121.0	[0..1]	[66..104]
gi\|23004357 - gi\|23004357\|ref\|ZP_00047730.1\| COG1278: Cold shock proteins [Magnetospirillum magnetotacticum MS-1]	121.0	[0..1]	[67..1]
gi\|58581493, gi\|... - gi\|58581493\|ref\|YP_200509.1\| cold shock protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|584260...	120.0	[0..1]	[68..8]
gi\|116609147, gi... - gi\|66963407\|ref\|ZP_00410979.1\| Cold-shock protein, DNA-binding [Arthrobacter sp. FB24], gi\|66871067\|...	119.0	[0..1]	[66..1]
gi\|21107498, gi\|... - gi\|21242090\|ref\|NP_641672.1\| cold shock protein [Xanthomonas axonopodis pv. citri str. 306], gi\|2110... gi\|21112338, gi\|... - gi\|21230743\|ref\|NP_636660.1\| cold shock protein [Xanthomonas campestris pv. campestris str. ATCC 339... gi\|167734172, gi... - gi\|188992412\|ref\|YP_001904422.1\| cold shock protein [Xanthomonas campestris pv. campestris str. B100... gi\|78046945, gi\|... - gi\|78046945\|ref\|YP_363120.1\| cold shock protein [Xanthomonas campestris pv. vesicatoria str. 85-10],... gi\|84367362, gi\|... - gi\|84623422\|ref\|YP_450794.1\| cold shock protein [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|8436... gi\|66769261, gi\|... - gi\|66769261\|ref\|YP_244023.1\| cold shock protein [Xanthomonas campestris pv. campestris str. 8004], g... gi\|166712821 - gi\|166712821\|ref\|ZP_02244028.1\| cold shock protein [Xanthomonas oryzae pv. oryzicola BLS256] gi\|188521720, gi... - gi\|188577268\|ref\|YP_001914197.1\| hypothetical protein PXO_01731 [Xanthomonas oryzae pv. oryzae PXO99...	118.0	[0..1]	[68..1]
gi\|88856605, gi\|... - gi\|88856605\|ref\|ZP_01131262.1\| cold shock protein [marine actinobacterium PHSC20C1], gi\|88814259\|gb\|...	117.0	[0..1]	[67..1]
gi\|41725001, gi\|... - gi\|71907020\|ref\|YP_284607.1\| cold-shock DNA-binding protein family protein [Dechloromonas aromatica ...	117.0	[0..1]	[67..1]
gi\|71368524, gi\|... - gi\|71368524\|ref\|ZP_00659019.1\| Cold-shock protein, DNA-binding [Nocardioides sp. JS614], gi\|71155753...	117.0	[0..1]	[67..1]
gi\|25029285, gi\|... - gi\|25029285\|ref\|NP_739339.1\| hypothetical protein CE2729 [Corynebacterium efficiens YS-314], gi\|2349...	117.0	[0..1]	[65..185]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGTVKWFN NAKGFGFICP DQGGEDVFAH YSTIEMEGYR TLKAGQPVQF EVEQGPKGMH  60
   61 ASAISPTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1mjcA
Description:	CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleic acid binding	2.67999218416128	bayes_pls_golite062009
DNA binding	2.0554473444871	bayes_pls_golite062009
binding	1.49502978097244	bayes_pls_golite062009
transcription regulator activity	0.537716356194117	bayes_pls_golite062009
structural constituent of ribosome	0.0989196136046104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: