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Protein Overview: gi|24373999, gi|...

General Information:
Name(s) found: gi|24373999 [NCBI NR]
gi|24348457 [NCBI NR]
Description(s) found:
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  • gi|24373999|ref|NP_718042.1| alcohol dehydrogenase, zinc-containing [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348457|gb|AAN55486.1|AE015686_7 alcohol dehydrogenase, zinc-containing [Shewanella oneidensis MR-1] [NCBI NR]
  • alcohol dehydrogenase, zinc-containing [Shewanella oneidensis MR-1]gi|24348457|gb|AAN55486.1| alcohol dehydrogenase, zinc-containing [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • alcohol dehydrogenase, zinc-containing [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 314 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: fermentation [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [ISSLink to PubMed article]
    alcohol dehydrogenase activity, zinc-dependent [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQHQVWAYQ TKTHSVTLNS VDIPALAADD ILVQNQAIGI NPVDWKFIKA NPINWSNGHV  60
   61 PGVDGAGVIV KVGAKVDSKM LGRRVAYHTS LKRHGSFAEF TVLNTDRVMT LPDNLSFERA 120
  121 AALPCPLLTA WQAFEKIPLT KQREVLIVGF GAVNNLLTQM LNNAGYVVDL VSASLSQALA 180
  181 AKRGVRHLYR EPSQVTQKYF AIFDAVNSQN AAALVPSLKA NGHIICIQDR IPAPIDPAFT 240
  241 RTISYHEIAL GALHDFGDRQ DWQILMQQGE ALLTLIAQGK MEIAAPDIFR FEQMIEALDH 300
  301 SEQTKLKTVL TLNE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..314] PSI-BLAST 77.69897 CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  3.00069798806876 bayes_pls_golite062009
  • catalytic activity
    		•  2.16785883389468 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  1.88863369347022 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.25551086002593 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.15662110494841 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  1.09344283680379 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle