YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373999, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373999, gi|....

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	292.0	[0..1]	[313..12]
gi\|40795502 - gi\|40795502\|gb\|AAR91477.1\| thermostable alcohol dehydrogenase [Geobacillus sp. M10EXG]	292.0	[0..1]	[312..1]
ADH3_GEOSE - Alcohol dehydrogenase OS=Geobacillus stearothermophilus PE=1 SV=1	288.0	[0..1]	[312..1]
gi\|75812768, gi\|... - gi\|75812768\|ref\|YP_320385.1\| zinc-containing alcohol dehydrogenase superfamily protein [Anabaena var...	285.0	[0..1]	[313..321]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	285.0	[0..1]	[312..1]
gi\|22776498, gi\|... - gi\|23098273\|ref\|NP_691739.1\| zinc-binding oxidoreductase [Oceanobacillus iheyensis HTE831], gi\|22776...	284.0	[0..1]	[313..1]
gi\|68053853, gi\|... - gi\|68053853\|ref\|ZP_00538018.1\| Zinc-containing alcohol dehydrogenase superfamily [Exiguobacterium si...	283.0	[0..1]	[312..1]
gi\|47564631, gi\|... - gi\|47564631\|ref\|ZP_00235676.1\| oxidoreductase, zinc-binding [Bacillus cereus G9241], gi\|47558783\|gb\|...	283.0	[0..1]	[313..1]
gi\|229601380, gi... - gi\|229601380\|ref\|YP_002867708.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthrac... gi\|254738549 - gi\|254738549\|ref\|ZP_05196252.1\| oxidoreductase, zinc-binding dehydrogenase family protein [Bacillus ... gi\|254752867 - gi\|254752867\|ref\|ZP_05204903.1\| oxidoreductase, zinc-binding dehydrogenase family protein [Bacillus ... gi\|254759139 - gi\|254759139\|ref\|ZP_05211165.1\| oxidoreductase, zinc-binding dehydrogenase family protein [Bacillus ... gi\|21401433, gi\|... - gi\|65320790\|ref\|ZP_00393749.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreduct... gi\|49186311, gi\|... - gi\|49186311\|ref\|YP_029563.1\| alcohol dehydrogenase, zinc-containing [Bacillus anthracis str. Sterne]... gi\|47503998, gi\|... - gi\|47528850\|ref\|YP_020199.1\| alcohol dehydrogenase, zinc-containing [Bacillus anthracis str. 'Ames A... gi\|30263461, gi\|... - gi\|30263461\|ref\|NP_845838.1\| alcohol dehydrogenase, zinc-containing [Bacillus anthracis str. Ames], ... gi\|165872349, gi... - gi\|165872349\|ref\|ZP_02216985.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthraci... gi\|170708548, gi... - gi\|170708548\|ref\|ZP_02898989.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthraci... gi\|167514952, gi... - gi\|167637445\|ref\|ZP_02395725.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthraci... gi\|190564341, gi... - gi\|190565024\|ref\|ZP_03017945.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthraci... gi\|172080588, gi... - gi\|177654623\|ref\|ZP_02936447.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthraci... gi\|227813662, gi... - gi\|227813662\|ref\|YP_002813671.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus anthrac...	282.0	[0..1]	[313..1]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQHQVWAYQ TKTHSVTLNS VDIPALAADD ILVQNQAIGI NPVDWKFIKA NPINWSNGHV  60
   61 PGVDGAGVIV KVGAKVDSKM LGRRVAYHTS LKRHGSFAEF TVLNTDRVMT LPDNLSFERA 120
  121 AALPCPLLTA WQAFEKIPLT KQREVLIVGF GAVNNLLTQM LNNAGYVVDL VSASLSQALA 180
  181 AKRGVRHLYR EPSQVTQKYF AIFDAVNSQN AAALVPSLKA NGHIICIQDR IPAPIDPAFT 240
  241 RTISYHEIAL GALHDFGDRQ DWQILMQQGE ALLTLIAQGK MEIAAPDIFR FEQMIEALDH 300
  301 SEQTKLKTVL TLNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.69897
Match:	1rjwA
Description:	CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	3.00069798806876	bayes_pls_golite062009
catalytic activity	2.16785883389468	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	1.88863369347022	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.25551086002593	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.15662110494841	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	1.09344283680379	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: